Last updated on 2025-12-24 19:50:31 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [104s/303s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 2.062, system: 0.172, elapsed: 7.708 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.650, system: 0.656, elapsed: 28.134 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.042, elapsed: 0.492 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.081, system: 0.842, elapsed: 13.588 seconds]
Computing values for grid cells...
... done. [user: 0.194, system: 0.012, elapsed: 0.505 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.949, system: 2.120, elapsed: 53.184 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.856, system: 0.119, elapsed: 9.674 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.245, system: 0.387, elapsed: 49.023 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.046, elapsed: 1.345 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.365, system: 0.987, elapsed: 23.849 seconds]
Computing values for grid cells...
... done. [user: 0.198, system: 0.018, elapsed: 0.449 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.593, system: 1.918, elapsed: 88.859 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.980, system: 0.150, elapsed: 7.667 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.509, system: 0.536, elapsed: 35.142 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.225, system: 0.054, elapsed: 1.126 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.242, system: 0.978, elapsed: 11.604 seconds]
Computing values for grid cells...
... done. [user: 0.199, system: 0.018, elapsed: 0.443 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.443, system: 0.428, elapsed: 1.973 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.434, system: 2.619, elapsed: 62.186 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.957, system: 0.176, elapsed: 3.341 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.030, system: 0.407, elapsed: 28.623 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.229, system: 0.051, elapsed: 0.926 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.872, system: 0.673, elapsed: 14.033 seconds]
Computing values for grid cells...
... done. [user: 0.197, system: 0.012, elapsed: 0.563 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.156, system: 1.055, elapsed: 31.727 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.298, system: 2.773, elapsed: 82.638 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [93s/347s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.948, system: 0.110, elapsed: 7.318 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.195, system: 0.281, elapsed: 33.852 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.022, elapsed: 0.736 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.302, system: 0.347, elapsed: 17.559 seconds]
Computing values for grid cells...
... done. [user: 0.197, system: 0.014, elapsed: 0.605 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.511, system: 0.860, elapsed: 63.002 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.780, system: 0.071, elapsed: 4.979 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.210, system: 0.307, elapsed: 37.989 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.029, elapsed: 0.973 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.279, system: 0.332, elapsed: 15.865 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.007, elapsed: 0.532 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.281, system: 0.847, elapsed: 62.728 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.807, system: 0.080, elapsed: 6.367 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.048, system: 0.256, elapsed: 36.410 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.205, system: 0.025, elapsed: 0.699 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.110, system: 0.288, elapsed: 17.223 seconds]
Computing values for grid cells...
... done. [user: 0.194, system: 0.012, elapsed: 0.738 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.216, system: 0.316, elapsed: 3.108 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.342, system: 1.235, elapsed: 68.000 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.782, system: 0.066, elapsed: 7.885 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.079, system: 0.288, elapsed: 37.658 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.027, elapsed: 0.845 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.240, system: 0.365, elapsed: 20.298 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.009, elapsed: 0.853 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.540, system: 0.917, elapsed: 57.730 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 28.810, system: 1.979, elapsed: 129.785 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64