Last updated on 2026-02-05 20:49:59 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/553s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.829, system: 0.097, elapsed: 2.960 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.966, system: 0.344, elapsed: 14.277 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.293, system: 0.031, elapsed: 0.457 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.069, system: 0.920, elapsed: 161.878 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.421 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.003, system: 1.445, elapsed: 181.039 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.598, system: 0.036, elapsed: 3.996 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.608, system: 0.060, elapsed: 21.190 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.016, elapsed: 1.183 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.094, system: 0.923, elapsed: 177.596 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.350 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.277, system: 1.062, elapsed: 205.513 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.551, system: 0.032, elapsed: 3.810 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.448, system: 0.060, elapsed: 21.108 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.313, system: 0.017, elapsed: 1.328 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.718, system: 0.768, elapsed: 34.810 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.005, elapsed: 0.257 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.274, system: 0.369, elapsed: 1.662 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.170, system: 1.293, elapsed: 64.291 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.631, system: 0.054, elapsed: 2.994 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.598, system: 0.135, elapsed: 14.526 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.016, elapsed: 0.427 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.679, system: 0.718, elapsed: 53.425 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.003, elapsed: 0.203 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.530, system: 0.650, elapsed: 21.413 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.532, system: 1.609, elapsed: 94.023 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/363s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.659, system: 0.059, elapsed: 2.526 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.598, system: 0.158, elapsed: 15.828 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.021, elapsed: 0.965 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.757, system: 0.838, elapsed: 110.454 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.003, elapsed: 0.210 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.980, system: 1.106, elapsed: 130.844 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.557, system: 0.031, elapsed: 2.686 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.667, system: 0.110, elapsed: 15.073 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.015, elapsed: 0.884 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.557, system: 0.687, elapsed: 46.619 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.168 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.727, system: 0.867, elapsed: 66.299 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.546, system: 0.030, elapsed: 2.146 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.698, system: 0.096, elapsed: 13.658 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.014, elapsed: 0.258 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.571, system: 0.708, elapsed: 38.050 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.006, elapsed: 0.182 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.163, system: 0.310, elapsed: 0.925 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.056, system: 1.192, elapsed: 55.978 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.617, system: 0.035, elapsed: 2.018 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.585, system: 0.068, elapsed: 12.292 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.015, elapsed: 0.265 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.554, system: 0.725, elapsed: 55.626 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.003, elapsed: 0.239 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.474, system: 0.627, elapsed: 30.378 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.292, system: 1.499, elapsed: 101.771 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64