Version 0.50.08, 28.7.2022
 * Corrected a small bug in evidencePlot

Version 0.50.06, 9.6.2022
 * Corrected a severe bug

Version 0.50
 * Optimized memory usage

Version 0.44, 22.5.2020
 * added leading edge analysis
 * added upset plots

Version 0.43, 17.4.2020
 * in tmodPanelPlot and pvalEffectPlot, modified the defaults such
   that it is now possible to use blue and red dots if the effect sizes are
   both smaller and larger than 0 (e.g. NES instead of AUC)
 * modified tmodSummary such that effect size and p value columns can be
   specifieed
 * result of tmodSummary is now an S3 class
 * modified tmodPanelPlot such that it can directly take the result of
   tmodSummary

Version 0.42, 5.3.2020
 * Updated tmodPCA & co
 * Added colors to evidence plots

Version 0.40, 28.11.2018
 * Added tmodGeneSetTest
 * Updated users manual

Version 0.39, 18.09.2018
 * Added tmodPLAGEtest

Version 0.38, 28.03.2018:
  * corrected several bugs (including problems with painting labels)
  * moved most of the vignette to the user guide, which can be displayed
    with tmodUserGuide()

Version 0.37, 9.03.2018:
  * added functions eigengene, modcors and modjaccard

Version 0.36, 09.03.2018:
  * corrected notorious problems with CRAN
  * please CRAN have mercy
  * I will sacrifice a virtual goat before submitting
  * changed parameter "order.by" to "sort.by" in tmodLimmaTest
  * added function pcaplot; tmod no longer depends on pca3d due to
    notorious problems with installing rgl on students Mac computers
  * limma examples now wrapped in if(require(limma))...

Version 0.35 
 * corrected a bug in behavior of filter.rows.auc

Version 0.34, 10.08.2017:
  * added filter.rows.auc option

Version 0.32:
  * Added tmodZtest and tmodWZtest
  * Modified gene.labels option for evidencePlot

Version 0.31:
  * Use of the plotwidgets package for pvalEffectPlot (rug, boxpie and pie options)

Version 0.30:
  * Apparently, knitr cache got packed in the package itself, blowing up
    its size ten fold.

Version 0.29:
  * A last minute bugfix

Version 0.28:
  * Added simpleBoxpie - rectangular plots that are thought better to
    visualize areas than regular pie charts
  * added a few palette functions from my personal repertoire


Version 0.27:
  * Introduced metabolic modules and created a vignette section for a case
    study in metabolomic
  * changed the return object of tmodPCA()
  * added the "extra" parameter to showModule(); showModule() can take a
    data frame or a vector now
  * added "row.labels.style" parameter to tmodPanelPlot()


Version 0.25:
  * corrected the malfunctioning testthat test. I HATE TESTTHAT. (Also, I
    read it as "test t hat" - and wonder about estimates and Student's t)


Version 0.24:
  * msigDB is broken, it no longer has unique identifiers in the global XML
    file. I corrected the import function to make sure identifiers are
    unique.
  * pvalEffectPlot was expecting log10(p-values) rather than p-values. This
    has been taken care of.
  * evidencePlot can now generate GSEA-style curves (with the "style"
    option)

Version 0.22:

  * added Cohen's d estimate and t statistic to tmodLimmaTopTable()
  * rewrote evidencePlot: it is now much more flexible