Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
| Version: | 0.11.1 |
| Depends: | R (≥ 3.0.0) |
| Imports: | RSQLite, R.utils, data.table, curl (≥ 5.0.0) |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2025-03-13 |
| DOI: | 10.32614/CRAN.package.taxonomizr |
| Author: | Scott Sherrill-Mix [aut, cre] |
| Maintainer: | Scott Sherrill-Mix <ssm at msu.edu> |
| BugReports: | https://github.com/sherrillmix/taxonomizr/issues |
| License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
| URL: | https://github.com/sherrillmix/taxonomizr/ |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | taxonomizr results |
| Reference manual: | taxonomizr.html , taxonomizr.pdf |
| Vignettes: |
taxonomizr usage (source, R code) |
| Package source: | taxonomizr_0.11.1.tar.gz |
| Windows binaries: | r-devel: taxonomizr_0.11.1.zip, r-release: taxonomizr_0.11.1.zip, r-oldrel: taxonomizr_0.11.1.zip |
| macOS binaries: | r-release (arm64): taxonomizr_0.11.1.tgz, r-oldrel (arm64): taxonomizr_0.11.1.tgz, r-release (x86_64): taxonomizr_0.11.1.tgz, r-oldrel (x86_64): taxonomizr_0.11.1.tgz |
| Old sources: | taxonomizr archive |
| Reverse imports: | DBTC, MetaScope |
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