This is a resubmission (v0.2.7) addressing reviewer comments on package quality, documentation, and replication material. Changes include:
\examples{} blocks to all exported functions;
slow MCMC-based functions use \dontrun{} while lightweight
functions (e.g., simulate_misaligned_data(),
get_abrm_model(), gen_correlated_spat(), and
all S3 methods for misaligned_data) now have fully
executable examplesvcov.abrm example from \dontrun{}
to \donttest{} per CRAN policy for examples that are valid
but too slow for routine checkingrun_abrm() silently writing a PDF to the user’s
working directory: changed default of save_plots from
TRUE to FALSE; diagnostic plots are now
obtained explicitly via plot() on the returned objectplot.misaligned_data() S3 method for spatial data
explorationcoef.abrm(), confint.abrm(),
fitted.abrm(), waic.abrm(),
print.waic_abrm() S3 methods to improve model result
inspection without accessing internal object structure directlyeval = TRUE for all
simulated-data (Example 1) code chunks so the vignette executes and
displays output during buildlibrary(nimble) call from vignette
(nimble is already loaded as a dependency of spatialAtomizeR)0 errors ✔ | 0 warnings ✔ | 0 notes ✔
There are currently no downstream dependencies for this package.
print() statement causing debug output in
console@keywords internal (no longer exported)