sclValid: Ensemble Validation and Ranking of Clustering Methods
Provides tools for clustering, validation, and ranking of single-cell RNA sequencing data. The package implements multiple clustering approaches, a collection of internal, external, and stability-based validation measures, and rank aggregation for comparing clustering solutions. User-defined clustering functions can also be incorporated into the validation framework. Methods are based in part on Visser and Datta (2025) <doi:10.1002/sim.70331>.
| Version: |
0.1.0 |
| Depends: |
R (≥ 3.5) |
| Imports: |
cccd, cli, clue, igraph, mclust, mnormt, pcaMethods, RaceID, RankAggreg, Rcpp, Rtsne, S4Vectors, SingleCellExperiment, SummarizedExperiment |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Published: |
2026-09-12 |
| DOI: |
10.32614/CRAN.package.sclValid (may not be active yet) |
| Author: |
Owen Visser [aut, cre],
Justina Žurauskienė [ctb] (pcaReduce compatibility code adapted from
the pcaReduce package),
Christopher Yau [ctb] (pcaReduce compatibility code adapted from the
pcaReduce package) |
| Maintainer: |
Owen Visser <owviss at gmail.com> |
| License: |
GPL (≥ 3) |
| NeedsCompilation: |
yes |
| Citation: |
sclValid citation info |
| Materials: |
README |
| CRAN checks: |
sclValid results |
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