rphylo: Phylogenetic Analysis with Dependent Discrete Models
Implementation of dependent discrete models (with reversible jump MCMC) derived from 'BayesTraits' V5.0.3 <https://github.com/AndrewPMeade/BayesTraits-Release/tree/Release>. Original software copyright Andrew Meade and contributors, distributed under GPL-3. Modifications for this package by Vivian G. Li <liguo.vivian@gmail.com>. The following articles should be referenced when using this package: Pagel, M., A. Meade and D. Barker (2004) "Bayesian estimation of ancestral character states on phylogenies" <doi:10.1080/10635150490522232>; Pagel, M. (1994) "Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters" <doi:10.1098/rspb.1994.0006>; Pagel, M. and A. Meade (2006) "Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo" <doi:10.1086/503444>.
| Version: |
0.1.1 |
| Depends: |
R (≥ 3.5) |
| Imports: |
ape, phangorn, expm, stats |
| Published: |
2026-06-23 |
| DOI: |
10.32614/CRAN.package.rphylo (may not be active yet) |
| Author: |
Vivian G. Li [aut, cre],
Andrew Meade [ctb] (Original 'BayesTraits' implementation),
Mark Pagel [ctb] (Original 'BayesTraits' implementation) |
| Maintainer: |
Vivian G. Li <liguo.vivian at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Citation: |
rphylo citation info |
| Materials: |
README |
| CRAN checks: |
rphylo results |
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