phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Version: 0.1.1
Depends: R (≥ 3.5.0), ggplot2 (≥ 2.2.1), phyloseq (≥ 1.24.0)
Imports: ggnetwork (≥ 0.5.1), igraph (≥ 1.1.2)
Suggests: knitr, rmarkdown
Published: 2024-02-05
DOI: 10.32614/CRAN.package.phyloseqGraphTest
Author: Julia Fukuyama [aut, cre]
Maintainer: Julia Fukuyama <julia.fukuyama at>
License: CC0
NeedsCompilation: no
CRAN checks: phyloseqGraphTest results


Reference manual: phyloseqGraphTest.pdf
Vignettes: Graph Testing Vignette


Package source: phyloseqGraphTest_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (arm64): phyloseqGraphTest_0.1.1.tgz, r-release (x86_64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (x86_64): phyloseqGraphTest_0.1.1.tgz
Old sources: phyloseqGraphTest archive

Reverse dependencies:

Reverse suggests: MiscMetabar, pctax


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