## ----setup, message=FALSE, warning=FALSE-------------------------------------- library(dplyr) library(tidyr) library(pfwim) # Load example data included in the package data("traits", package = "pfwim") data("feeding_rules", package = "pfwim") ## ----trait-preview------------------------------------------------------------ # Preview the input structure head(traits) ## ----rules-preview------------------------------------------------------------ # Preview the input structure head(feeding_rules) ## ----infer-edgelist----------------------------------------------------------- edgelist <- infer_edgelist( data = traits, cat_combo_list = feeding_rules, col_taxon = "species", certainty_req = "all", hide_printout = TRUE ) head(edgelist) ## ----powerlaw-webs------------------------------------------------------------ realised_webs <- powerlaw_prey( el = edgelist, n_samp = 5, y = 2.5 ) # Inspect first realised web realised_webs[[1]] ## ----custom-func-------------------------------------------------------------- # Define a custom in-degree distribution function custom_func <- function(r, M, y) (M - r + 1)^(-y) realised_webs_custom <- powerlaw_prey( el = edgelist, n_samp = 5, y = 2, func = custom_func ) # First custom web realised_webs_custom[[1]]