2010-10-08 Martin Maechler * R/pcalg.R (pdsep): biCC: speedup 2010-10-07 Markus Kalisch * R/pcalg.R (fci): Added option "labels" to give nodenames to PAG (myfun): Undid MMs change in plot-fci, since the edge marks were not plotted properly anymore 2010-09-28 Markus Kalisch * man/gmI.Rd: description & details added * man/gmG.Rd: description & details added * man/gmD.Rd: description & details added * man/gmB.Rd: description & details added 2010-09-10 Martin Maechler * R/pcalg.R (lm.cov): solve(A, b), *NOT* solve(A) %*% b !!!!!!!! (legal.psep): speed up * R/pcalg.R (plot(): make 'main' working, as for plot() 2010-09-09 Markus Kalisch * inst/doc/pcalgDoc.Snw (effect): Adapted text and code to fit to the new data files * man/skeleton.Rd: Adapted examples to new form of data files * man/pc.Rd: Adapted examples to new form of data files 2010-08-11 Markus Kalisch * tests/test_fci.R: Tests for conservative FCI added * tests/test_pc.R: Tests for conservative PC added 2010-08-09 Markus Kalisch * R/pcalg.R (upd): improved by diego (ucp): improved by diego (discr.path): improved by diego (faith.check): new by diego (checkTriple): new by markus and diego (pc.cons.intern): new by diego (find.upd): improved by diego (triple2numb): new by diego (pc): option 'conservative' included (udag2pdagRelaxed): option 'unfVect' added for use in conservative PC (fci): options 'conservative', 'biCC' and 'cons.rules' added (pdsep): options 'unfVect' and 'biCC' added (udag2pag): option 'unfVect' added for use in conservative PC 2010-04-14 Markus Kalisch * R/pcalg.R (randomDAG): Bug fix (Empty graph could not be transformed into adj matrix with as(G,"matrix"). Although it worked with wgtMatrix, it was still worth fixing. 2010-04-06 Markus Kalisch * R/pcalg.R (idaFast): Included rownames indicating the element of y.pos.set, to which the line corresponds 2010-03-26 Markus Kalisch * man/skeleton.Rd (fixedEdges): removed x11() and added split window * man/pc.Rd (fixedEdges): removed x11() and added split window * R/pcalg.R (ida): No change in functionality; changed implementation of argument y.notparent so that it is easier to understand. Checked that old and new version give identical results on 100 random graphs. 2010-03-23 Martin Maechler * DESCRIPTION (Version): 1.0-1 * R/pcalg.R (plot-methods, plotSG): need Rgraphviz::plot() now that Rgraphviz is not imported *before* method definition. * R/AllClasses.R: move class definitions here (at least). * pcalg.R (plotSG): add 'main' argument; do *return* the subgraph, clean up code. * man/plotSG.Rd: document 'main', use markup (\code{..}) properly. 2010-03-22 Markus Kalisch * NAMESPACE: no longer import (from) Rgraphviz * DESCRIPTION: ditto