--- title: "Integrating with ggplot2" output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{Integrating with ggplot2} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8} --- The openaq package provides functionality for visualizing data through the built-in R `base::plot` package (see vignette("plotting")). A popular alternative package for creating data visualizations is [`ggplot2`](https://ggplot2.tidyverse.org/), known for its declarative API and ease of use for creating highly customized plots. The `openaq` package automatically provides data output as a data frame, making it straightforward to integrate openaq with `ggplot2`. To demonstrate how to use `ggplot2` with `openaq`, we will query PM2.5 measurement data. We will query data from sensor 12235029, a PM2.5 sensor located in Delhi, India, for May 2025. We make sure specify the correct timezone (Asia/Kolkata) to ensure we query datetime in the local time of the location. ``` r pm25_data <- list_sensor_measurements( 12235029, datetime_from = as.POSIXct("2025-05-01", tz = "Asia/Kolkata"), datetime_to = as.POSIXct("2025-05-31", tz = "Asia/Kolkata") ) head(pm25_data) ``` ``` ## value parameter_id parameter_name parameter_units period_label ## 1 78 2 pm25 µg/m³ raw ## 2 78 2 pm25 µg/m³ raw ## 3 78 2 pm25 µg/m³ raw ## 4 78 2 pm25 µg/m³ raw ## 5 80 2 pm25 µg/m³ raw ## 6 91 2 pm25 µg/m³ raw ## period_interval datetime_from datetime_to latitude longitude ## 1 00:15:00 2025-05-01 00:45:00 2025-05-01 01:00:00 NA NA ## 2 00:15:00 2025-05-01 01:00:00 2025-05-01 01:15:00 NA NA ## 3 00:15:00 2025-05-01 01:15:00 2025-05-01 01:30:00 NA NA ## 4 00:15:00 2025-05-01 01:30:00 2025-05-01 01:45:00 NA NA ## 5 00:15:00 2025-05-01 02:30:00 2025-05-01 02:45:00 NA NA ## 6 00:15:00 2025-05-01 02:45:00 2025-05-01 03:00:00 NA NA ## min q02 q25 median q75 q98 max avg sd expected_count expected_interval ## 1 NA NA NA NA NA NA NA NA NA 1 00:15:00 ## 2 NA NA NA NA NA NA NA NA NA 1 00:15:00 ## 3 NA NA NA NA NA NA NA NA NA 1 00:15:00 ## 4 NA NA NA NA NA NA NA NA NA 1 00:15:00 ## 5 NA NA NA NA NA NA NA NA NA 1 00:15:00 ## 6 NA NA NA NA NA NA NA NA NA 1 00:15:00 ## observed_count observed_interval percent_complete percent_coverage ## 1 1 00:15:00 100 100 ## 2 1 00:15:00 100 100 ## 3 1 00:15:00 100 100 ## 4 1 00:15:00 100 100 ## 5 1 00:15:00 100 100 ## 6 1 00:15:00 100 100 ``` In this exercise, we will demonstrate how to plot both a box plot and a histogram with `ggplot2`. The plots are common visualizations for exploring air quality measurement data and will serve as guides for working with `ggplot` and `openaq`. A box plot illustrates the distribution of PM2.5 values in May 2025. It shows the median, interquartile range, and helps identifies outliers in the dataset. This chart can help us understand the overall spread and average levels of particulate matter. `ggplot2` makes creating this kind of plot easy with it's `ggplot2::geom_boxplot()` function. Because the data from the `openaq` is presented in long format and as a data frame we can directly add the data to the `ggplot2::ggplot()` function for charting. ``` r ggplot(pm25_data, aes(x = "", y = value)) + geom_boxplot() + labs( title = "Summary of May 2025 Data in Delhi, India", y = expression("PM"[2.5]~"Concentration ("*mu*"g/m"^3*")") ) + theme_grey() ``` ![plot of chunk ggplot2-box-plot](figure/ggplot2-box-plot-1.png) Now, let's summarize the frequency distribution of PM2.5 values over the month. We will use a histogram, for which `ggplot2` provides the `ggplot2::geom_histogram()` function. To calculate an optimal bin width for the histogram we can use [Scott's Rule](https://en.wikipedia.org/wiki/Scott%27s_rule), which adapts to the data spread and size. ``` r scott_bw <- function(x) { (max(x) - min(x)) / nclass.scott(x) } ``` This histogram provides a quick view of the overall distribution and skew of the data, highlighting standard value ranges and the presence of high-pollution events. ``` r ggplot(pm25_data, aes(x = value)) + geom_histogram( binwidth = scott_bw(pm25_data$value) ) + theme_grey() ``` ![plot of chunk ggplot2-histogram](figure/ggplot2-histogram-1.png) You can customize your histogram by changing the color and fill as shown below. This histogram highlights overall distribution and possible high-pollution events. You can further customize fill color, bins, and themes. ``` r ggplot(pm25_data, aes(x = value)) + geom_histogram( binwidth = scott_bw(pm25_data$value), fill = "#584DAE", color = "black" ) + labs( title = expression("Customized Histogram of PM"[2.5]~"Measurements"), x = expression("PM"[2.5]~"Concentration ("*mu*"g/m"^3*")"), y = "Count" ) + theme_minimal() ``` ![plot of chunk custom-ggplot2-histogram](figure/custom-ggplot2-histogram-1.png)