omicsTools: Omics Data Processing Toolbox
Provides tools for processing and analyzing omics data from
genomics, transcriptomics, proteomics, and metabolomics platforms. Includes
data import, filtering, imputation, normalization, targeted
calibration, spectrum export, visualization,
statistical comparisons, and reproducible QC reports. The QC-RLSC
(quality control-based robust LOESS signal correction) algorithm is used
for normalization. Dunn et al. (2011) <doi:10.1038/nprot.2011.335>.
| Version: |
2.0.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
bs4Dash, cli, dplyr, DT, ggplot2, htmltools, jsonlite, readr, rlang, stats, shiny (≥ 1.7.2), tibble, tidyr, utils, tools |
| Suggests: |
testthat (≥ 3.2.0), knitr, rmarkdown, cmmr, readxl, openxlsx, zip |
| Published: |
2026-11-04 |
| DOI: |
10.32614/CRAN.package.omicsTools |
| Author: |
Yaoxiang Li [aut],
Meth Jayatilake [aut],
Anushka Dongaonkar [aut],
Rupayan Mallick [aut],
Amrita Cheema [cre, aut] |
| Maintainer: |
Amrita Cheema <metabolomics at georgetown.edu> |
| BugReports: |
https://github.com/cheemalab/omicsTools/issues |
| License: |
AGPL (≥ 3) |
| URL: |
https://github.com/cheemalab/omicsTools |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
omicsTools results |
Documentation:
Downloads:
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