multivarious 0.3.2
Dependencies
- Removed the optional
PRIMME backend from
geneig() and cPCAplus() (and dropped
PRIMME from Suggests), as the
PRIMME package is scheduled for archival on CRAN. The
iterative "rspectra" and "subspace" backends
and the dense
"geigen"/"robust"/"sdiag"
backends cover the same generalized eigenproblems.
Mixed-effect inference
- Added explicit
term_scopes and
exchangeability overrides to mixed_regress(),
with exchangeability metadata now carried through
summary(), effect(), and effect-operator
printing.
- Fixed grouped row-metric whitening/unwhitening for random-effect
designs by using the Cholesky orientation implied by the row
metric.
- Hardened
perm_test.effect_operator() by making the
supported one-sided alternative explicit, preserving seed metadata,
honoring explicit exchangeability schemes, and using a fixed statistic
family for each sequential permutation step.
- Improved
bootstrap.effect_operator() for grouped
designs by relabeling duplicated bootstrap clusters as distinct
resampled groups, aligning multi-component loadings with an orthogonal
Procrustes rotation, and preserving seed metadata.
Tests
- Added regression tests for grouped whitening, explicit term-scope
and exchangeability overrides, effect-operator permutation statistic
selection, subject bootstrap relabeling, seed metadata, and PRIMME
removal.
multivarious 0.3.1
Behavior Changes
- Changed
partial_project() default
least_squares from TRUE to
FALSE.
- Changed
project_block.multiblock_projector() default
least_squares from TRUE to FALSE
(now matches partial_project()).
Bug Fixes
- Fixed
reconstruct_new.bi_projector()
double-preprocessing bug that caused incorrect reconstruction when
applied to held-out data.
- Fixed blockwise preprocessing paths that could allocate very large
temporary matrices with multiblock data, and hardened
standardize() for missing and zero-variance columns.
Vignette Improvements
- Rewrote CrossValidation vignette with working examples (fixed broken
reconstruct() usage and results extraction).
- Cleaned up PermutationTesting vignette: improved structure, replaced
dense tables with readable prose.
- Cleaned up Regress vignette: broke up long code block into focused
subsections.
- Cleaned up Extending vignette: removed commented-out code walls,
simplified examples.
Tests
- Added regression tests for
reconstruct_new() on
held-out data.
multivarious 0.3.0
Bug Fixes
- Fixed T/F shorthand to TRUE/FALSE in
pca() for CRAN
compliance.
- Converted
\dontrun{} to \donttest{} for
executable but slow examples.
- Fixed
bootstrap.plsc() duplicate argument handling when
called with named X/Y arguments.
- Fixed
regress() PLS method dimension mismatch.
- Fixed iris data frame to matrix conversion in examples.
Internal Changes
- Registered S3 methods:
classifier.projector,
inverse_projection.projector,
perm_ci.pca.
- Added missing
importFrom directives for
coefficients and combn.
- Replaced non-ASCII characters with ASCII equivalents in
documentation.
Deprecated
prep() is deprecated in favor of fit() for
preprocessing pipelines.
perm_ci.pca() is deprecated.
perm_test.plsc() is deprecated.
multivarious 0.2.0