lame 1.3.4
- The handful of Gibbs samplers and helpers once adapted from
amen have been rewritten from the underlying published
methods, so the package carries no derived code and stays under the MIT
license.
- Fixed a prior-scaling bug that could silently collapse the latent
factors in asymmetric
ame() fits with
R > 0; fits now match amen.
dynamic_ab fits carry per-period posterior SDs, so
ab_plot(fit, plot_type = "ribbon") draws a real credible
band.
- A few documented options now do what they say:
log_lik_method = "augmented", gof(nsim = NULL)
(uses all draws), and bootstrap error bars in ab_plot() for
ame_als fits. Dropped an unused argument and fixed some
stale help text.
- Fitting no longer leaves a
.Random.seed behind or
touches options(warn).
- Fixed Rd markup flagged by CRAN.
- Time-varying coefficients (
dynamic_beta) compose freely
with the multiplicative latent factors (R > 0) and
additive sender/receiver effects, for every family and network type.
Coefficients can follow AR(1), random-walk, or Matern dynamics, and
predict() carries that drift into its forecasts.
netify objects can be passed straight to
ame(), lame(), and the ALS fitters; a
network’s symmetric attribute is honored automatically, and
named covariates are aligned to Y by actor.
- Set
posterior_opts = list(save_UV = TRUE) to keep the
per-draw latent factors (and the bipartite mixing matrix), so
latent_positions(), uv_plot(), and the
goodness-of-fit tools report posterior uncertainty directly. Symmetric
fits now store V_samples (U L per draw)
alongside U_samples, so the per-draw latent similarity
U L U' is reconstructable via
simulate_posterior(fit, "UV").
summary() on a lame fit exposes the
coefficient table under $coefficients, matching
summary.ame and the broom/lm
idiom.
Known limitations
- Bipartite
fit$U / fit$V are a single
posterior draw (the rotation is unidentified); use fit$YPM
or reconstruct_UVPM() for the stable multiplicative
structure.
- In the bipartite
dynamic_uv path, latent persistence
rho_uv is only weakly identified – read it qualitatively.
The unipartite path is unaffected.
lame 1.2.0
- Cleaned up ALS support and documentation.
- Raised the
lame(method = "als") iteration cap and
exposed dynamic ALS convergence component traces.
- Stabilized dynamic-UV MCMC by normalizing the raw
U/V coordinate scale, centering additive
row/column effects, pooling very sparse additive effects toward the
prior mean, and carrying ALS fits into MCMC with
als_start_vals().
lame 1.1.0
New features
- Fast, MCMC-free estimation via
ame_als() and
lame_als(): an alternating least squares / IRLS point
estimator for the normal, binary, and Poisson families. Supports
parametric-bootstrap and sandwich standard errors and the full S3 method
set (coef(), vcov(), confint(),
predict(), tidy(), glance(), and
the diagnostic plots).
lame 1.0.0
Initial CRAN Submission
Features
- Cross-sectional network analysis via
ame() with support
for 6 distributional families: normal, binary, ordinal, Poisson,
censored binary, and fixed rank nomination.
- Longitudinal network analysis via
lame() with dynamic
additive and multiplicative effects modeled as AR(1) processes.
- Support for both unipartite (square) and bipartite (rectangular)
network structures.
- Covariate support: dyadic (
Xdyad), row
(Xrow), and column (Xcol) covariates with
automatic design matrix construction.
- S3 methods:
print(), summary(),
coef(), vcov(), confint(),
predict(), fitted(), residuals(),
simulate(), plot().
- Visualization functions:
trace_plot(),
gof_plot(), ab_plot(), uv_plot()
for MCMC diagnostics and model assessment.
- Goodness-of-fit via posterior predictive checks with
gof().
- C++ acceleration via Rcpp and RcppArmadillo for core sampling
routines.
- Handles changing actor compositions across time periods.