hmde: Hierarchical Methods for Differential Equations
Wrapper for Stan that offers a number of in-built models to implement a hierarchical Bayesian longitudinal model for repeat observation data. Model choice selects the differential equation that is fit to the observations. Single and multi-individual models are available. O'Brien et al. (2024) <doi:10.1111/2041-210X.14463>.
| Version: | 1.2.1 |
| Depends: | R (≥ 4.1.0) |
| Imports: | methods, dplyr, ggplot2, purrr, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rlang, rstan (≥ 2.18.1), rstantools (≥ 2.3.1.1) |
| LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), withr, mnormt, here, patchwork, deSolve, cowplot, mixtools, MASS |
| Published: | 2025-07-04 |
| DOI: | 10.32614/CRAN.package.hmde |
| Author: | Daniel Falster 
[aut, ctb],
Tess O'Brien
[aut, cre, cph],
Fonti Kar [ctb],
David Warton
[aut, ctb] |
| Maintainer: | Tess O'Brien <tess_obrien at fastmail.com> |
| BugReports: | https://github.com/traitecoevo/hmde/issues |
| License: | GPL (≥ 3) |
| URL: | https://traitecoevo.github.io/hmde/ |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Materials: | README, NEWS |
| CRAN checks: | hmde results |
Documentation:
| Reference manual: | hmde.html , hmde.pdf |
| Vignettes: |
canham (source, R code) constant-growth (source, R code) Here be dragons (source, R code) hmde (source, R code) hmde for Mathematicians (source, R code) von-bertalanffy (source, R code) |
Downloads:
| Package source: | hmde_1.2.1.tar.gz |
| Windows binaries: | r-devel: hmde_1.2.1.zip, r-release: hmde_1.2.1.zip, r-oldrel: hmde_1.2.1.zip |
| macOS binaries: | r-release (arm64): hmde_1.2.1.tgz, r-oldrel (arm64): hmde_1.2.1.tgz, r-release (x86_64): hmde_1.2.1.tgz, r-oldrel (x86_64): hmde_1.2.1.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=hmde to link to this page.