haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data

Haplotype and covariate relative risks in case-control data are estimated by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights. French et al. (2006) <doi:10.1002/gepi.20161>.

Version:	1.3.3
Depends:	R (≥ 2.13.0), haplo.stats, survival
Published:	2025-03-26
DOI:	10.32614/CRAN.package.haplo.ccs
Author:	Benjamin French [cre, aut], Shawn Garbett [ctb], Thomas Lumley [aut]
Maintainer:	Benjamin French <b.french at vumc.org>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://github.com/vubiostat/haplo.ccs
NeedsCompilation:	no
Materials:	README
CRAN checks:	haplo.ccs results

Documentation:

Reference manual:

haplo.ccs.html , haplo.ccs.pdf

Downloads:

Package source:	haplo.ccs_1.3.3.tar.gz
Windows binaries:	r-devel: haplo.ccs_1.3.3.zip, r-release: haplo.ccs_1.3.3.zip, r-oldrel: haplo.ccs_1.3.3.zip
macOS binaries:	r-release (arm64): haplo.ccs_1.3.3.tgz, r-oldrel (arm64): haplo.ccs_1.3.3.tgz, r-release (x86_64): haplo.ccs_1.3.3.tgz, r-oldrel (x86_64): haplo.ccs_1.3.3.tgz
Old sources:	haplo.ccs archive

Linking:

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