## ----setup, include = FALSE---------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  dpi = 300,
  dev = "png"
)
library(gridmicrotex)
library(grid)

## ----inline, fig.height = 0.8, fig.width = 6, out.width = "90%"---------------
grid.newpage()
grid.markdown(
  r"(The **fitted** $\hat{\beta} = (X^\top X)^{-1} X^\top y$ has ~~no~~ `se` = *0.42*.)",
  x = 0.02, hjust = 0, gp = gpar(fontsize = 13)
)

## ----html-css, fig.height = 1.3, fig.width = 6, out.width = "90%", dev = "ragg_png", dev.args = list()----
grid.newpage()
grid.markdown(
  r"(<span style="font-size:22pt;color:#2E5E8E">Model fit</span>,
     <span style="font-family:serif">serif</span> and
     <span style="font-family:monospace">mono</span>.<br><br>
     The <span style="color:#B22222">**residual**</span> for H<sub>0</sub>
     is <u>within</u> <mark>$2\sigma$</mark>.)",
  x = 0.02, y = 0.9, hjust = 0, vjust = 1, gp = gpar(fontsize = 13)
)

## ----block, fig.height = 4, fig.width = 4.6, out.width = "80%"----------------
md <- r"(
# Model summary

The slope is $\beta_1$ with *p* < 0.001, and this paragraph is long
enough that it wraps inside the column.

## Diagnostics

- residuals look **fine**
- $R^2 = 0.87$
- no influential points

~~~r
fit <- lm(y ~ x, data = d)  # refit
if (anyNA(d)) {
    stop("missing values")
}
~~~

> Assumptions were checked and hold.
)"

grid.newpage()
grid.draw(markdown_box_grob(
  md,
  width   = unit(4.6, "in"),
  padding = unit(10, "pt"),
  box_gp  = gpar(fill = "grey97", col = "grey40"),
  gp      = gpar(fontsize = 13),
  style = markdown_style(css = "pre { background: #ece2f0 }") # Code background
))

## ----lists-tables, fig.height = 2, fig.width = 4.4, out.width = "80%"---------
md <- r"(
### Checklist

- [x] fit the model
- [ ] write it up

Coefficients:

| term | $\beta$  | *p* |
|:-----|------------:|:---:|
| intercept | 30.1 | *** |
| slope | -5.3 | *** |
)"

grid.newpage()
grid.draw(markdown_box_grob(
  md,
  width   = unit(4.4, "in"),
  padding = unit(8, "pt"),
  gp      = gpar(fontsize = 13)
))

## ----image, fig.height = 1.8, fig.width = 4, out.width = "70%"----------------
# Any .png / .jpeg path works; this one ships with the png package.
img <- system.file("img", "Rlogo.png", package = "png")

md <- sprintf("
A figure with a caption below it.

![the R logo](%s)

The caption explains the figure.
", img)

grid.newpage()
grid.draw(markdown_box_grob(
  md, width = unit(4, "in"), padding = unit(8, "pt"),
  gp = gpar(fontsize = 13)
))

## ----style-css, fig.height = 1.2, fig.width = 5, out.width = "85%"------------
doc <- r"(
# Results

The slope is $\beta_1$ with *p* < 0.001.

> Worth a second look.
)"

grid.newpage()
grid.draw(markdown_box_grob(
  doc,
  width = unit(4.5, "in"), padding = unit(10, "pt"),
  style = "
    h1         { color: steelblue; font-size: 1.8rem }
    blockquote { color: grey40; border-left: 3px solid steelblue }
  ",
  gp = gpar(fontsize = 13)
))

## ----style-r, eval = FALSE----------------------------------------------------
# markdown_style(
#   h1         = md_style(color = "steelblue", font_size = 1.8),
#   blockquote = md_style(color = "grey40",
#                         border_left = "3px solid steelblue")
# )

## ----style-preset, eval = FALSE-----------------------------------------------
# markdown_style("github", h1 = md_style(color = "firebrick"))
# file.show(system.file("css", "github.css", package = "gridmicrotex"))

## ----style-div, fig.height = 1, fig.width = 5, out.width = "85%"--------------
doc <- '
Ordinary text.

<div class="note">

**Note.** This chunk is indented and set apart.

</div>

Ordinary text again.
'

grid.newpage()
grid.draw(markdown_box_grob(
  doc,
  width = unit(4.5, "in"), padding = unit(10, "pt"),
  style = ".note { color: grey35; padding-left: 1.5rem }",
  gp = gpar(fontsize = 13)
))

## ----style-table, fig.height = 2, fig.width = 5, out.width = "85%"------------
tbl <- r"(
| Term | Meaning |
|:-----|:--------|
| $\beta_1$ | the slope, which needs a good deal of room to explain |
| $\sigma$ | the residual standard deviation |
)"

grid.newpage()
grid.draw(markdown_box_grob(
  tbl,
  width = unit(4, "in"), padding = unit(8, "pt"),
  style = "
    table { table-layout: fixed; border-color: #D1D9E0 }
    th    { background: #F6F8FA }
    tr    { border-bottom: 1px solid #D1D9E0 }
  ",
  gp = gpar(fontsize = 13)
))

## ----latex-escape, fig.height = 2.4, fig.width = 4.6, out.width = "80%"-------
tbl <- r"($$\begin{array}{|l|c|c|}\hline
\rowcolor{#F6F8FA}\multicolumn{3}{|c|}{\textbf{Model comparison}}\\\hline
\textbf{Model}&\textbf{AIC}&\textbf{R}^2\\\hline
\text{linear}&214.3&0.71\\
\cellcolor{#DDF0DD}\text{quadratic}&\cellcolor{#DDF0DD}201.8&\cellcolor{#DDF0DD}0.87\\\hline
\end{array}$$)"

grid.newpage()
grid.draw(markdown_box_grob(
  paste0("Compare the two fits.\n\n", tbl, "\n\nThe quadratic wins."),
  width = unit(4.6, "in"), padding = unit(10, "pt"),
  style = "math { color: #1F3864; font-size: 1.1rem }",
  gp = gpar(fontsize = 13)
))

## ----degrade, fig.height = 1.5, fig.width = 4.4, out.width = "80%"------------
doc <- r"(A [link](https://example.org) keeps its text, an
![inline diagram](missing.png) becomes its alt text, and an
<unknown>unknown tag</unknown> keeps its content.

Footnotes[^1] land at the foot.

<table><tr><td>an HTML table is dropped</td></tr></table>

[^1]: Like this one.)"

grid.newpage()
grid.draw(markdown_box_grob(
  doc,
  width = unit(4.4, "in"), padding = unit(8, "pt"),
  gp = gpar(fontsize = 13)
))