| Title: | Rapid Gene Characterization Using Public Genomic Databases |
| Version: | 1.0.0 |
| Description: | A user-friendly interface for characterizing gene function by disease type and tissue site, integrating curated data from publicly available genomic and proteomic databases to support candidate gene prioritization in experimental workflows. |
| Depends: | R (≥ 4.1.0) |
| License: | GPL-3 |
| Encoding: | UTF-8 |
| RoxygenNote: | 8.0.0 |
| Imports: | httr2, gtexr |
| URL: | https://github.com/martincyd/genefindr |
| BugReports: | https://github.com/martincyd/genefindr/issues |
| Suggests: | knitr, rmarkdown, spelling |
| VignetteBuilder: | knitr |
| NeedsCompilation: | no |
| Packaged: | 2026-06-02 21:07:59 UTC; cyd |
| Author: | Cydnie Martin [aut, cre] |
| Maintainer: | Cydnie Martin <martincydenise@gmail.com> |
| Repository: | CRAN |
| Date/Publication: | 2026-06-08 18:30:02 UTC |
Characterize a gene using public genomic databases
Description
Characterize a gene using public genomic databases
Usage
findr(gene, disease = NULL, site = NULL)
Arguments
gene |
Character. Gene symbol (e.g. "TP53") |
disease |
Character. Disease context (e.g. "alzheimer") |
site |
Character. Cancer site (e.g. "breast", "lung"). Can be a vector for multi-site comparison. |
Value
Invisibly returns a data frame of results
Examples
findr("TP53", site = "breast")
Characterize multiple genes using public genomic databases
Description
Characterize multiple genes using public genomic databases
Usage
findr_multi(genes, disease = NULL, site = NULL, output = "print")
Arguments
genes |
Character vector. Gene symbols (e.g. c("TP53", "BRCA1")) |
disease |
Character. Disease context |
site |
Character. Cancer site |
output |
Character. "print" or "table" |
Value
Invisibly returns a data frame of results
Examples
findr_multi(c("TP53", "BRCA1"), site = "breast")