gRaphiaExtra: An R Package for Integrating 'Seurat' Objects into 'gRaphia'

Utilising graph-based network analysis frameworks, 'Graphia' <https://graphia.app/> is a powerful open source visual analytics application developed to aid the interpretation of large and complex datasets. For more details, see article by Freeman et al. (2022) <doi:10.1371/journal.pcbi.1010310>. 'gRaphia' is an extension of the 'Graphia' application within the R environment, providing tools for network analysis and visualisation. 'gRaphiaExtra' provides additional functionality specifically designed for single-cell RNA-sequencing data, enabling users to seamlessly integrate and utilise existing 'Seurat' analysis outputs in 'gRaphia'. The package also provides supplementary functions to support and enhance the 'gRaphia' analysis framework.

Version: 0.26.9
Depends: R (≥ 4.4.2.0)
Imports: checkmate, dplyr, stats, utils
Published: 2026-09-18
DOI: 10.32614/CRAN.package.gRaphiaExtra (may not be active yet)
Author: Nilabhra R Das ORCID iD [cre, aut], Kaitlyn A Flynn ORCID iD [aut], John P Kemp ORCID iD [aut]
Maintainer: Nilabhra R Das <n.das at uq.edu.au>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
CRAN checks: gRaphiaExtra results

Documentation:

Reference manual: gRaphiaExtra.html , gRaphiaExtra.pdf

Downloads:

Package source: gRaphiaExtra_0.26.9.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): gRaphiaExtra_0.26.9.tgz, r-oldrel (x86_64): gRaphiaExtra_0.26.9.tgz

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