## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) library(flexstanr) ## ----eval = FALSE------------------------------------------------------------- # flexstanr::use_flexstanr() ## ----------------------------------------------------------------------------- opts <- stan_options(chains = 2, iter = 500, seed = 1) str(opts) ## ----------------------------------------------------------------------------- # `parallel_chains` is a cmdstanr word; the rstan backend rejects it. try(stan_options(backend = "rstan", parallel_chains = 4)) ## ----eval = FALSE------------------------------------------------------------- # # `"coverage"` is resolved from your package's stanmodels (rstan) or # # inst/stan/coverage.stan (cmdstanr). # fit <- fit_model( # "coverage", # dat_stan = data_list, # init = init_list, # stan_opts = opts # ) ## ----eval = FALSE------------------------------------------------------------- # # posterior draws as an iterations x chains x parameters array # draws <- backend_draws_array(fit) # # # named parameters, matching rstan::extract()'s shape # post <- backend_extract(fit, pars = c("beta", "sigma")) # # # guard against the degenerate "no draws" case before using a fit # stopifnot(backend_has_draws(fit)) ## ----------------------------------------------------------------------------- backend_has_draws(list()) ## ----eval = FALSE------------------------------------------------------------- # opts <- stan_options(backend = "cmdstanr", parallel_chains = 4, iter_warmup = 500)