epiparameter: Classes and Helper Functions for Working with Epidemiological Parameters

Classes and helper functions for loading, extracting, converting, manipulating, plotting and aggregating epidemiological parameters for infectious diseases. Epidemiological parameters extracted from the literature are loaded from the 'epiparameterDB' R package.

Version: 0.4.1
Depends: R (≥ 4.1.0)
Imports: cachem, checkmate, cli, distcrete, distributional, epiparameterDB, graphics, lifecycle, pillar, rlang, stats, tools, utils
Suggests: bookdown, DT, ggplot2, knitr, RColorBrewer, rmarkdown, spelling, testthat (≥ 3.0.0), vdiffr (≥ 1.0.7), visNetwork
Published: 2025-01-24
DOI: 10.32614/CRAN.package.epiparameter
Author: Joshua W. Lambert ORCID iD [aut, cre, cph], Adam Kucharski ORCID iD [aut, cph], Carmen Tamayo ORCID iD [aut], Hugo Gruson ORCID iD [ctb, rev], Sebastian Funk ORCID iD [ctb], Pratik Gupte ORCID iD [rev], James M. Azam ORCID iD [rev], Chris Hartgerink ORCID iD [rev], Tim Taylor ORCID iD [rev]
Maintainer: Joshua W. Lambert <joshua.lambert at lshtm.ac.uk>
BugReports: https://github.com/epiverse-trace/epiparameter/issues
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/epiparameter/, https://epiverse-trace.github.io/epiparameter/
NeedsCompilation: no
Language: en-GB
Citation: epiparameter citation info
Materials: README NEWS
In views: Epidemiology
CRAN checks: epiparameter results

Documentation:

Reference manual: epiparameter.pdf
Vignettes: Data Collation and Synthesis Protocol (source, R code)
Current database (source, R code)
Design Principles for {epiparameter} (source, R code)
Getting Started with {epiparameter} (source, R code)
Parameter extraction and conversion in {epiparameter} (source, R code)

Downloads:

Package source: epiparameter_0.4.1.tar.gz
Windows binaries: r-devel: epiparameter_0.4.1.zip, r-release: epiparameter_0.4.1.zip, r-oldrel: epiparameter_0.4.1.zip
macOS binaries: r-release (arm64): epiparameter_0.4.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): epiparameter_0.4.1.tgz, r-oldrel (x86_64): epiparameter_0.4.0.tgz
Old sources: epiparameter archive

Reverse dependencies:

Reverse imports: simulist
Reverse suggests: superspreading

Linking:

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