effectR: Predicts Oomycete Effectors

Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) <doi:10.1038/nature08358>.

Version: 1.0.2
Depends: R (≥ 3.5.0)
Imports: seqinr (≥ 3.3.6), ggplot2 (≥ 2.2.1), shiny, reshape2, utils, rmarkdown, viridis
Suggests: knitr, testthat
Published: 2018-09-30
DOI: 10.32614/CRAN.package.effectR
Author: Javier Tabima [aut, cre], Niklaus J. Grunwald [ths]
Maintainer: Javier Tabima <tabimaj at oregonstate.edu>
License: GPL-2 | GPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: effectR results


Reference manual: effectR.pdf
Vignettes: effectR: An R package to call oomycete effectors


Package source: effectR_1.0.2.tar.gz
Windows binaries: r-devel: effectR_1.0.2.zip, r-release: effectR_1.0.2.zip, r-oldrel: effectR_1.0.2.zip
macOS binaries: r-release (arm64): effectR_1.0.2.tgz, r-oldrel (arm64): effectR_1.0.2.tgz, r-release (x86_64): effectR_1.0.2.tgz, r-oldrel (x86_64): effectR_1.0.2.tgz
Old sources: effectR archive


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