coloc: Colocalisation Tests of Two Genetic Traits

Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1371/journal.pgen.1009440>.

Version: 5.2.3
Depends: R (≥ 3.5)
Imports: data.table, ggplot2, methods, viridis, stats, grDevices, susieR (≥ 0.12.06), utils
Suggests: knitr, testthat, mvtnorm, magrittr, rmarkdown
Published: 2023-10-03
DOI: 10.32614/CRAN.package.coloc
Author: Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]
Maintainer: Chris Wallace <cew54 at>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
Citation: coloc citation info
Materials: README NEWS
CRAN checks: coloc results


Reference manual: coloc.pdf
Vignettes: Coloc: a package for colocalisation analyses
Coloc: data structures
Coloc: under a single causal variant assumption
Coloc: sensitivity to prior values
DEPRECATED Coloc: relaxing the single causal variant assumption
Coloc: using SuSiE to relax the single causal variant assumption


Package source: coloc_5.2.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): coloc_5.2.3.tgz, r-oldrel (arm64): coloc_5.2.3.tgz, r-release (x86_64): coloc_5.2.3.tgz, r-oldrel (x86_64): coloc_5.2.3.tgz
Old sources: coloc archive

Reverse dependencies:

Reverse imports: colocPropTest, cophescan, RapidoPGS


Please use the canonical form to link to this page.