chevron 0.2.12
- Code enhancement in
dst01 and dtht01
tables, adding table_names and parent_names
when using split_rows_by and analysis on the
same variable multiple times, enhancing the table paths. Upstream
enhancement from rtables.
chevron 0.2.11
- A new
precision arguments now control the statistical
analysis and numbers of digits presented in ext01.
- A new
map argument now controls the direction of
abnormality associated with each parameter in lbt05.
- A new
keep argument prevents the removal of the
"Any" (or other user specified) rows during the processing
of lbt07 if the table is pruned.
- A new
keep argument prevents the removal of the
"Any Abnormality" (or other user specified) rows during the
processing of lbt05.
- The
label attributes of AEBODSYS and
AEDECOD in adae are automatically modified
during the pre processing of AET02, AET03,
AET04 and AET10.
- New
dataset slot in chevron_tlg class to
store the name of the data sets used in the template.
- Fix a bug that caused all rows to be pruned from the
lbt05 table even when they contain non-zero values.
chevron 0.2.10
- Change package maintainer to Joe Zhu.
chevron 0.2.9
- The default precision for parameters in
egt01 is now of
0 digits.
vst01 default precision for diastolic blood pressure,
systolic blood pressure and pulse rate is now 0. Default precision for
other parameters remains 2.
lbt01 default precision for several parameters is now
provided by the lab_paramcd_precision function.
lbt05 now prints a clearer error message when
PARAM, AVALCAT1 and ABN_DIR
variables in adlb are not of class
factor.
ttet01_main now prints a clearer error message when a
level in arm_var variable is missing.
lbt05 has a new argument map that controls
the direction of abnormality associated with each parameter. The default
values are provided by the new lab_paramcd_abn_dir
function.
- A bug in
lbt05 that was removing every rows when
prune_0 = TRUE has been fixed.
- A new
keep argument prevents the removal of the
"Any" (or other user specified) rows during the processing
of lbt05 and lbt07 when the table is
pruned.
chevron 0.2.8
- New
unwrap argument prints preprocessing,
main, postprocessing and layout
function upon execution of the run method.
- The
chevron.run.verbose option and
R_CHEVRON_RUN_VERBOSE environment variable control the
verbose argument of the run method, while the
chevron.run.unwrap option and
R_CHEVRON_RUN_UNWRAP environment variable control the
unwrap argument.
chevron 0.2.7
- Add the
AEL02, AEL03 and
CML02A_gl templates.
- Modify the post processing of
MHT01 to allow multiple
row_split_var.
- Improve the
report_null method to facilitate the
creation of null reports.
- Export the
std_postprocessing function to simplify post
processing logic.
AET01 can now additionally display the number of death
and withdrawal using the show_wd argument.
MNG01 line type can now be controlled with the
line_type argument.
script_funs doesn’t rely anymore on source code of pre
processing functions.
chevron 0.2.6
- Added assertion on class of
summaryvars argument of
dmt01().
- Additional arguments can be passed to
ael01_nollt run
method, for instance to split the resulting listing.
strat argument of kmg01_main is now
deprecated - use strata instead.
grob_list and gg_list are now deprecated -
use list() instead.
chevron 0.2.5
MNG01 plot can now be displayed without error bars and
can display a continuous temporal scale on the x axis.
- Add a
chevron_simple class which only contains main
function.
- Remove
details argument in script_funs,
add name argument.
- In the
run method, the argument passed through
... are combined with the one passed through
user_arg. ... arguments have priority.
AET05 preprocessing now filters on
"(AE|CQ|SMQ)TTE" rather than "AETTE".
- Rename the dataset
ADAETTE in syn_data
object to ADSAFTTE. Trim the dataset to remove unused
variables.
- Use uppercase variable names in
AET05 and
AET05_ALL.
- The string replacing
NA values in the tables is now
controlled by the tern_default_na_str option set during
package load.
- Specified minimal version of package dependencies.
chevron 0.2.4
TTET01 now uses “NE” to represent NA values.
chevron 0.2.3
- Fix argument printing for
run method.
- Remove six unused tables from the
syn_data object.
- Fix
EGT03 to allow multiple parameters.
- Update
TTET01 to provide meaningful error message if
stratification variables do not exist in analysis dataset.
PDT01 preprocessing now filters addv to
retain only major protocol deviation.
AEL01_NOLLT now has argument unique to
keep only the unique rows in listing.
AET01_AESI, EGT02 and LBT14
now remove the check in preprocessing function.
COXT01 will drop levels on arm_var in
preprocessing function now.
MNG01 uses a ggtheme argument to set
graphic parameters instead of the now defunct show_h_grid,
show_v_grid and legend_pos arguments. The
table arguments now controls the behavior of the table. The
arguments show_n and show_table are now
defunct.
- Add
RMPT06 template.
- The
stats and precision arguments now
control the statistical analysis and numbers of digits presented in
DMT01.
FSTG01 and FSTG02 template removes the
max_colwidth argument. Default font size of the plot is set
to 7.
- Introduce
set_section_div function to add empty line
separator between specified row splits.
AET02 template the default order of “Total number of
events” and “Total number of patients with at least one adverse event”
switched.
chevron 0.2.2
- Allow
EGT03 to include multiple parameters.
- Allow
KMG01 to include stratified variables.
- Allow
LBT06 and LBT14 to be split by
pages.
- Allow
AET02, CMT01A to change the summary
statistics with summary_labels argument.
- Add
FSTG02 template.
- Update the argument
"is_event" in KMG01 to
"IS_EVENT".
- Update the argument
"is_rsp" in FSTG01 to
"IS_RSP".
FSTG01 and FSTG02 stratification variable
labels will be truncated to fit the page.
- Update the script for
chevron_tlg objects. The
details argument is deprecated.
- Fix issue when
run method is executed with
do.call and verbose argument.
chevron 0.2.1
- Placeholder strings are now replaced during layout creation using
dunlin::render_safe function.
- New
chevron_catalog vignette details usage and version
of chevron templates.
- The
run method renders the errors faster thanks to the
new internal do_call function.
- Add
verbose argument for run method which
would print the argument used.
- Add
row_split_var and page_var as argument
for some template.
- The
dataset slot in chevron_tlg class has
been removed.
- Add
CFBT01 template. VST01,
EGT01 and LBT01 are now all following
CFBT01. By default parameters are displayed by page .
- Add
RMPT03, RMPT04 and RMPT05
which follow RMPT01.
- Add
COXT01 template. COXT02 is now based
on COXT01.
- Add
AET05 and AET05_ALL templates.
- Add
LBT15 based on LBT04.
LBT04 has new arguments to make it more flexible.
- Update
EGT03 to use ACTARMCD as default
arm variable, and remove the preprocessing of filtering to “HR”.
- Update
EXT01 to allow it to be displayed by
PARCAT2.
- Update
LBT06 template to use PARAM as row
split.
- Convert
AVISIT to factor and order levels according to
AVISITN in preprocessing.
- Update
MNG01 so that the numeric jitter
argument controls the width of data spread along the x-axis.
chevron 0.2.0
- Remove the usage of
dm class of object. The chevron
functions now expect list of data.frame as
adam_db argument.
- Remove variants in template names.
- Remove deprecated
getter functions
get_main, get_preprocess and
get_postprocess.
- Simplify
pre function and add more data checks in
main function.
- Remove redundant assertion functions.
- Add more templates:
AET10, KMG01,
RSPT01, RMPT01, COXT02,
FSTG01, and LBT06.
chevron 0.1.4
- Use
list to replace character in template
arguments.
chevron 0.1.3
- Add more templates:
AET01_AESI, EGT03,
EGT05_QTCAT, LBT04, LBT05,
LBT07, LBT14, PDT01,
PDT02.
- Deprecation of previous
getter function like
get_main to main and
main<-.
- Add
chevron_t, chevron_l and
chevron_g subclass of chevron_tlg.
- Add
script_funs and script_args to obtain
string representation of the full code.
- Update to current templates.
chevron 0.1.2
chevron 0.1.1
- First release with implementation of:
AET01,
AET02, AET03, AET04,
CMT01A, CMT02_PT, DMT01,
DST01, DTHT01, EGT01,
EGT02, EXT01, LBT01,
MHT01, MNG01, VST01,
VST02.