## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.width = 7, fig.height = 5 ) ## ----eval=FALSE--------------------------------------------------------------- # install.packages(c("future", "future.apply")) ## ----parallel-setup, message=FALSE, warning=FALSE, eval=FALSE----------------- # library(SuperSurv) # library(future) # library(survival) # # data("metabric", package = "SuperSurv") # # # 1. Define the parallel plan # # 'multisession' opens background R sessions. # # We tell it to use 4 CPU cores (workers). # plan(multisession, workers = 4) ## ----run-parallel, eval=FALSE------------------------------------------------- # X <- metabric[, grep("^x", names(metabric))] # new.times <- seq(50, 200, by = 25) # # # 2. Run the model with parallel = TRUE # fit_parallel <- SuperSurv( # time = metabric$duration, # event = metabric$event, # X = X, # newX = X, # new.times = new.times, # event.library = c("surv.coxph", "surv.weibull", "surv.rfsrc"), # cens.library = c("surv.coxph"), # parallel = TRUE, # <--- The magic argument # nFolds = 5 # ) ## ----close-parallel, eval=FALSE----------------------------------------------- # # 3. Return to sequential processing # plan(sequential)