RHybridFinder: Identification of Hybrid Peptides in Immunopeptidomic Analyses

Tool for the analysis Mass Spectrometry (MS) data in the context of immunopeptidomic analysis for the identification of hybrid peptides and the predictions of binding affinity of all peptides using 'netMHCpan' <doi:10.1093/nar/gkaa379> while providing a summary of the netMHCpan output. 'RHybridFinder' (RHF) is destined for researchers who are looking to analyze their MS data for the purpose of identification of potential spliced peptides. This package, developed mainly in base R, is based on the workflow published by Faridi et al. in 2018 <doi:10.1126/sciimmunol.aar3947>.

Version: 0.2.0
Depends: R (≥ 3.5.0)
Imports: doParallel, foreach, seqinr
Suggests: knitr, rmarkdown
Published: 2021-08-17
DOI: 10.32614/CRAN.package.RHybridFinder
Author: Frederic Saab [aut, cre], Peter Kubiniok [aut]
Maintainer: Frederic Saab <frederic.saab at umontreal.ca>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: NEWS
CRAN checks: RHybridFinder results


Reference manual: RHybridFinder.pdf
Vignettes: RHybridFinder


Package source: RHybridFinder_0.2.0.tar.gz
Windows binaries: r-devel: RHybridFinder_0.2.0.zip, r-release: RHybridFinder_0.2.0.zip, r-oldrel: RHybridFinder_0.2.0.zip
macOS binaries: r-release (arm64): RHybridFinder_0.2.0.tgz, r-oldrel (arm64): RHybridFinder_0.2.0.tgz, r-release (x86_64): RHybridFinder_0.2.0.tgz, r-oldrel (x86_64): RHybridFinder_0.2.0.tgz
Old sources: RHybridFinder archive


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