A collection of utility functions for community ecology analyses, with emphasis on workflows using the 'phyloseq' and 'vegan' packages. Includes functions for normalizing OTU tables, computing alpha diversity via rarefaction (using a fast C++ implementation), differential abundance comparisons with compact letter displays, primer checking for amplicon sequencing, plotting QIIME 2/DADA2 generated transition stats and miscellaneous helpers for ordination plots and taxonomic name formatting.
| Version: | 0.2.1 |
| Depends: | R (≥ 4.1.0) |
| Imports: | agricolae, ape, Biostrings, dada2, data.table, dplyr, ggplot2, insect, multcompView, magrittr, phyloseq, Rcpp, readr, scales, ShortRead, SRS, stringr, tibble, vegan (≥ 2.4-6) |
| LinkingTo: | Rcpp |
| Suggests: | dunn.test, knitr, rmarkdown, reshape2, testthat (≥ 3.0.0) |
| Published: | 2026-05-13 |
| DOI: | 10.32614/CRAN.package.QsRutils (may not be active yet) |
| Author: | John Quensen [aut, cre, cph] |
| Maintainer: | John Quensen <quensenj at msu.edu> |
| BugReports: | https://github.com/jfq3/QsRutils/issues |
| License: | GPL-2 |
| URL: | https://github.com/jfq3/QsRutils |
| NeedsCompilation: | yes |
| Additional_repositories: | https://bioconductor.org/packages/release/bioc |
| Materials: | README, NEWS |
| CRAN checks: | QsRutils results |
| Reference manual: | QsRutils.html , QsRutils.pdf |
| Vignettes: |
Compare Relative Abundances Among Treatments (source, R code) Recreate arc sine Conversion Table A-16 (source, R code) |
| Package source: | QsRutils_0.2.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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