KOGMWU: Functional Summary and Meta-Analysis of Gene Expression Data

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

Version:	1.2
Depends:	R (≥ 2.10), pheatmap
Published:	2019-02-19
DOI:	10.32614/CRAN.package.KOGMWU
Author:	Mikhail V. Matz
Maintainer:	Mikhail V. Matz <matz at utexas.edu>
License:	GPL-3
NeedsCompilation:	no
CRAN checks:	KOGMWU results

Documentation:

Reference manual:

KOGMWU.pdf

Downloads:

Package source:	KOGMWU_1.2.tar.gz
Windows binaries:	r-devel: KOGMWU_1.2.zip, r-release: KOGMWU_1.2.zip, r-oldrel: KOGMWU_1.2.zip
macOS binaries:	r-release (arm64): KOGMWU_1.2.tgz, r-oldrel (arm64): KOGMWU_1.2.tgz, r-release (x86_64): KOGMWU_1.2.tgz, r-oldrel (x86_64): KOGMWU_1.2.tgz
Old sources:	KOGMWU archive

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