Nov 2021 Version 2.5 * gui was crashing. Removed font awesome dependencies. * minor change to ensure compatibility with Eigen 3.4.0 June 2021 Version 2.4.5 * removed matrixcalc dependency due to this package being archived. April 2021 Version 2.4.4 * Some minor changes Jan 2021 Version 2.4.3 * Eagle is being moved to a docker container for easy installation. Some minor changes to facilitate the move. * Fixed vignette issue Dec 2020 Version 2.4.2 * Vignette added Oct 2020 Version 2.4.1 * Minor change - replaced Gamma with Lambda for consistency with extBIC parameterisation. I did this previously but missed a couple of the changes. Aug 2020 Version 2.4 * Fixed bug in plotting function in OpenGUI * Improved look of PlotAM * Added interactive option to PlotAM to give users the option of saving the plot to file. July 2020 Version 2.3 * Changed gamma parameter in AM function to lambda parameter to be consistent with extBIC parameterisation. * Added plot function PlotAM. This capability was in the GUI but not as a function. * Added extra table of summary information to SummaryAM function * Fixed bug in plotting function in GUI March 2020 Version 2.2 * Added ability to read vcf files to ReadMarker function. * Revised SummaryAM to also calculate and report allelic effect sizes * Significant (order of magnitude) improvement in speed to FPR4AM (used for finding an optimal gamma for the model building process) * Changed home screen in OpenGUI app because Eagel workflow has changed. * Added Bioinformatics citation for Eagle package Nov 2019 Version 2.1.1 * Fixed bug introduced by last change in ReadMap function. Nov 2019 Version 2.1.0 * Continued improvement of handling of missing data. * Better handling of errors by OpenGUI. Previously, app would crash if an read error was encountered. Nov 2019 Version 2.0.0 * Major update of Eagle. * Significant performance improvements, with at least a 50% increase in speed. * Also fixed several issues associated with the Z matrix. * Improved handling of missing data. Aug 2019 Version 1.5.2 * Minor change * Noalias feature in cpp code fixed. May 2019 Version 1.5.1 * Minor change to GUI. * GUI made more robust and removed library calls. * Havent been able to solve the mysterious uv_write errors that are written to the R consul when GUI is run. The errors are intermittent and random but have no effect on performance or the analysis. May 2019 Version 1.5.0 * Major update to GUI. * A plotting page has been add. Users can now examine the change in score statistic (used for identifying the next "best" SNP to enter the model), across a chromosome or genome. This can be done for each step of the model building process. April 2019 Version 1.4.0 * Modified SummaryAM to work with Z matrix. Feb 2019 Version 1.3.0 * Fixed missing data issue with FPR4AM where it would crash if the trait contained missing data. Nov 2018 Version 1.2.0 * Modified FPR4AM so that it will give the best gamma value for a user-defined false positive rate, trait, and analysis model.