Last updated on 2026-04-29 21:49:23 CEST.
| Package | ERROR | OK |
|---|---|---|
| wrGraph | 13 | |
| wrMisc | 13 | |
| wrProteo | 7 | 6 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 7, OK: 6
Version: 2.0.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘wrProteoVignette1.Rmd’ using rmarkdown
--- finished re-building ‘wrProteoVignette1.Rmd’
--- re-building ‘wrProteoVignetteUPS1.Rmd’ using rmarkdown
Quitting from wrProteoVignetteUPS1.Rmd:515-517 [testProline]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `combineMultFilterNAimput()`:
! testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
---
Backtrace:
▆
1. └─wrProteo::testRobustToNAimputation(dataPL, imputMethod = "informed")
2. └─wrProteo::combineMultFilterNAimput(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'wrProteoVignetteUPS1.Rmd' failed with diagnostics:
testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
--- failed re-building ‘wrProteoVignetteUPS1.Rmd’
SUMMARY: processing the following file failed:
‘wrProteoVignetteUPS1.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.0.2
Check: examples
Result: ERROR
Running examples in ‘wrProteo-Ex.R’ failed
The error most likely occurred in:
> ### Name: extractTestingResults
> ### Title: Extract Results From Moderated t-tests
> ### Aliases: extractTestingResults
>
> ### ** Examples
>
> grp <- factor(rep(LETTERS[4:2],c(2,3,3)))
> set.seed(2017); t8 <- matrix(round(rnorm(208*8,10,0.4),2), ncol=8,
+ dimnames=list(paste(letters[],rep(1:8,each=26),sep=""), paste(grp,c(1:2,1:3,1:3),sep="")))
> t8[3:6,1:2] <- t8[3:6,1:2] +3 # augment lines 3:6 (c-f)
> t8[5:8,c(1:2,6:8)] <- t8[5:8,c(1:2,6:8)] -1.5 # lower lines
> t8[6:7,3:5] <- t8[6:7,3:5] +2.2 # augment lines
> ## expect to find C/A in c,d,g, (h)
> ## expect to find C/D in c,d,e,f
> ## expect to find A/D in f,g,(h)
> library(wrMisc) # for testing we'll use this package
> test8 <- moderTestXgrp(t8, grp)
> extractTestingResults(test8)
extractTestingResults : Cannot find list-element 'annot' in test8
Error in extractTestingResults(test8) :
extractTestingResults : Need list-elment avCol$ind - but is ABSENT !
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘wrProteoVignette1.Rmd’ using rmarkdown
Quitting from wrProteoVignette1.Rmd:852-854 [results1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `extractTestingResults()`:
! extractTestingResults : Need list-elment avCol$ind - but is ABSENT !
---
Backtrace:
▆
1. └─wrProteo::extractTestingResults(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'wrProteoVignette1.Rmd' failed with diagnostics:
extractTestingResults : Need list-elment avCol$ind - but is ABSENT !
--- failed re-building ‘wrProteoVignette1.Rmd’
--- re-building ‘wrProteoVignetteUPS1.Rmd’ using rmarkdown
Quitting from wrProteoVignetteUPS1.Rmd:515-517 [testProline]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `combineMultFilterNAimput()`:
! testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
---
Backtrace:
▆
1. └─wrProteo::testRobustToNAimputation(dataPL, imputMethod = "informed")
2. └─wrProteo::combineMultFilterNAimput(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'wrProteoVignetteUPS1.Rmd' failed with diagnostics:
testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
--- failed re-building ‘wrProteoVignetteUPS1.Rmd’
SUMMARY: processing the following files failed:
‘wrProteoVignette1.Rmd’ ‘wrProteoVignetteUPS1.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'wrProteoVignette1.Rmd' using rmarkdown
--- finished re-building 'wrProteoVignette1.Rmd'
--- re-building 'wrProteoVignetteUPS1.Rmd' using rmarkdown
Quitting from wrProteoVignetteUPS1.Rmd:515-517 [testProline]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `combineMultFilterNAimput()`:
! testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
---
Backtrace:
▆
1. └─wrProteo::testRobustToNAimputation(dataPL, imputMethod = "informed")
2. └─wrProteo::combineMultFilterNAimput(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'wrProteoVignetteUPS1.Rmd' failed with diagnostics:
testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
--- failed re-building 'wrProteoVignetteUPS1.Rmd'
SUMMARY: processing the following file failed:
'wrProteoVignetteUPS1.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64