Last updated on 2026-10-07 21:53:44 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 105.79 | 471.57 | 577.36 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 84.88 | 315.05 | 399.93 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 84.00 | 346.57 | 430.57 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 94.00 | 339.58 | 433.58 | OK | |
| r-devel-windows-x86_64 | 0.1.3 | 131.00 | 2639.00 | 2770.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 118.49 | 433.52 | 552.01 | OK | |
| r-release-linux-x86_64 | 0.1.3 | OK | ||||
| r-release-macos-arm64 | 0.1.3 | 25.00 | 118.00 | 143.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 71.00 | 466.00 | 537.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 123.00 | 2102.00 | 2225.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.3 | 68.00 | 482.00 | 550.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 146.00 | 2252.00 | 2398.00 | ERROR |
Version: 0.1.3
Check: tests
Result: ERROR
Running 'testthat.R' [14m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(strollur)
Attaching package: 'strollur'
The following objects are masked from 'package:base':
assign, names, summary
>
> test_check("strollur")
bins is not a valid type for the abundance function. Types include: 'bin', 'sequence', sample' and 'treatment'.
Added 3 sequences.
Added 2425 sequences.
Added 2 resource references.
Assigned 3 sequence abundances.
Assigned 2425 sequence abundances.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin representative sequences.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Assigned 531 otu bins.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence taxonomies.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin representative sequences.
Assigned 531 otu bin taxonomies.
Assigned 2425 asv bins.
Assigned 2425 asv bin taxonomies.
Assigned 63 phylotype bins.
Assigned 63 phylotype bin taxonomies.
Added 2 resource references.
Added a contigs_report report.
Added a metadata report.
> The table was created with strollur version 0.1.0, which is compatible with the current strollur version: 0.1.1. Converting and importing.
Added 2425 sequences.
Assigned 2425 sequence taxonomies.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin representative sequences.
Assigned 531 otu bin taxonomies.
Assigned 2425 asv bins.
Assigned 2425 asv bin taxonomies.
Assigned 63 phylotype bins.
Assigned 63 phylotype bin taxonomies.
Added 2 resource references.
Added a metadata report.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence taxonomies.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin representative sequences.
Assigned 531 otu bin taxonomies.
Assigned 2425 asv bins.
Assigned 2425 asv bin taxonomies.
Assigned 63 phylotype bins.
Assigned 63 phylotype bin taxonomies.
Added 2 resource references.
Added a contigs_report report.
Added a metadata report.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence taxonomies.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin representative sequences.
Assigned 531 otu bin taxonomies.
Assigned 2425 asv bins.
Assigned 2425 asv bin taxonomies.
Assigned 63 phylotype bins.
Assigned 63 phylotype bin taxonomies.
Added 2 resource references.
Added a contigs_report report.
Added a metadata report.
Assigned 3 otu bins.
Added 3 sequences.
Assigned 3 sequence abundances.
Assigned 3 otu bins.
Assigned 531 otu bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Added 531 sequences.
Assigned 531 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin taxonomies.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 19 samples to treatments.
Added 2425 sequences.
Assigned 2425 sequence taxonomies.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Added 531 sequences.
Assigned 531 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin taxonomies.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence taxonomies.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 531 otu bin representative sequences.
Assigned 531 otu bin taxonomies.
Assigned 2425 asv bins.
Assigned 2425 asv bin taxonomies.
Assigned 63 phylotype bins.
Assigned 63 phylotype bin taxonomies.
Added 2 resource references.
Added a contigs_report report.
Added a metadata report.
Added 4 sequences.
Added 1 resource references.
Assigned 4 sequence abundances.
Assigned 2 otu bins.
Added 4 sequences.
Assigned 4 sequence abundances.
Assigned 2 otu bins.
Added 1 resource references.
Added 2425 sequences.
Added 19 sequences.
> The strollur objects public field 'sequence_tree' are not equivalent.
> The strollur objects public field 'sequence_tree' are not equivalent.
Assigned 531 otu bins.
Assigned 531 otu bins.
> The strollur objects public field 'sample_tree' are not equivalent.
> The strollur objects public field 'sample_tree' are not equivalent.
> The strollur objects public field 'raw' are not equivalent.
The strollur objects have different dataset names.
Added 2425 sequences.
The strollur objects have different sequence data statuses.
Added 2425 sequences.
Assigned 2425 sequence taxonomies.
The strollur objects have different classification statuses.
Assigned 2425 sequence taxonomies.
The strollur objects have different number of unique sequences.
Added 4 sequences.
Added 4 sequences.
The strollur objects include different sequence names.
Added 4 sequences.
Added 4 sequences.
The strollur objects include different sequence strings.
Added 4 sequences.
Added 4 sequences.
The strollur objects include different sequence comments.
Assigned 4 sequence taxonomies.
Assigned 4 sequence taxonomies.
The strollur objects include different sequence taxonomies.
Assigned 2 otu bins.
Added 4 sequences.
The strollur objects include different sequence bin assignment statuses.
Assigned 2 otu bins.
Added 1 resource references.
The strollur objects include different resource_references.
Assigned 4 sequence abundances.
Assigned 4 sequence abundances.
The strollur objects include different sequence abundance data.
Assigned 4 sequence abundances.
Assigned 2 otu bins.
Assigned 2 otu bins.
The strollur objects include different bin data.
Added a contigs_report report.
Added 2425 sequences.
The strollur objects include different report data.
Added a metadata report.
The strollur objects include different report data.
Added 4 sequences.
Added 4 sequences.
The strollur objects include different sequence trash codes.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Added a contigs_report report.
Added a metadata report.
Added 2 resource references.
starts ends nbases ambigs polymers numns numseqs
Minimum: 1 375 249.0000 0 3.000000 0 1.000
2.5%-tile: 1 375 252.0000 0 4.000000 0 2849.075
25%-tile: 1 375 252.0000 0 4.000000 0 28490.750
Median: 1 375 253.0000 0 4.000000 0 56981.500
75%-tile: 1 375 253.0000 0 5.000000 0 85472.250
97.5%-tile: 1 375 254.0000 0 6.000000 0 111113.925
Maximum: 1 375 256.0000 0 6.000000 0 113963.000
Mean: 1 375 252.7406 0 4.496082 0 56981.643
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Added 2425 sequences.
Added 4 sequences.
Added 4 sequences.
Added 4 sequences.
Added 4 sequences.
Added 1 resource references.
Assigned 4 sequence abundances.
Assigned 2 otu bins.
Assigned 531 otu bins.
Assigned 531 otu bin taxonomies.
Assigned 2425 sequence abundances.
Assigned 2425 sequence abundances.
Assigned 2425 sequence abundances.
Assigned 4 sequence abundances.
Assigned 4 sequence abundances.
Assigned 4 sequence abundances.
Assigned 3 otu bins.
Assigned 3 otu bins.
Assigned 3 otu bins.
Assigned 531 otu bins.
Assigned 531 otu bins.
Assigned 4 sequence taxonomies.
Added 1 resource references.
Assigned 4 sequence taxonomies.
Assigned 4 sequence taxonomies.
Assigned 4 sequence taxonomies.
Assigned 2 otu bins.
Assigned 4 otu bins.
Assigned 4 otu bin taxonomies.
Added 1 resource references.
Assigned 4 otu bin taxonomies.
Assigned 531 otu bins.
Assigned 531 otu bin taxonomies.
Added a metadata report.
Added 2 resource references.
Added 1 resource references.
Added 2 resource references.
Added a align_report report.
Added 2 sequences.
Your report does not contain an entry for every sequence in your dataset, ignoring report.
Added a contigs_report report.
Added a contigs_report report.
Added 2 sequences.
Your report does not contain an entry for every sequence in your dataset, ignoring report.
Added a chimera_report report.
Added a chimera_report report.
Added a contigs_report report.
Added a alignment_report report.
Length Overlap_Length Overlap_Start Overlap_End MisMatches Num_Ns
Minimum: 252.0 249 2 251 0 0
2.5%-tile: 252.0 249 2 251 0 0
25%-tile: 252.0 249 2 251 0 0
Median: 253.0 249 2 251 1 0
75%-tile: 253.0 249 2 251 2 0
97.5%-tile: 253.0 249 2 251 7 0
Maximum: 253.0 249 2 251 7 0
Mean: 252.6 249 2 251 2 0
Expected_Errors
Minimum: 1.00000000
2.5%-tile: 1.00000000
25%-tile: 1.00000000
Median: 1.00000000
75%-tile: 1.00000000
97.5%-tile: 1.00000000
Maximum: 1.00000000
Mean: 0.01306454
QueryLength TemplateLength SearchScore QueryStart QueryEnd
Minimum: 252.0 292.0 58.000 1 252.0
2.5%-tile: 252.0 292.0 59.000 1 252.0
25%-tile: 252.0 292.0 67.000 1 252.0
Median: 253.0 293.0 72.000 1 253.0
75%-tile: 253.0 293.0 75.000 1 253.0
97.5%-tile: 253.0 293.0 82.000 1 253.0
Maximum: 253.0 293.0 83.000 1 253.0
Mean: 252.6 292.6 70.434 1 252.6
TemplateStart TemplateEnd PairwiseAlignmentLength GapsInQuery
Minimum: 20 271.0 252.0 0
2.5%-tile: 20 271.0 252.0 0
25%-tile: 20 271.0 252.0 0
Median: 20 272.0 253.0 0
75%-tile: 20 272.0 253.0 0
97.5%-tile: 20 272.0 253.0 0
Maximum: 20 272.0 253.0 0
Mean: 20 271.6 252.6 0
GapsInTemplate LongestInsert SimBtwnQuery&Template
Minimum: 0 0 93.000
2.5%-tile: 0 0 93.000
25%-tile: 0 0 95.000
Median: 0 0 95.000
75%-tile: 0 0 97.000
97.5%-tile: 0 0 98.000
Maximum: 0 0 98.000
Mean: 0 0 94.692
Added 4 sequences.
Added 4 sequences.
Added 4 sequences.
> Your tree does not contain a node for every sequence in your dataset, ignoring tree. Missing tree nodes for: seq4 .
Added 2425 sequences.
Added 4 sequences.
> Your dataset does not contain sample data, ignoring sample tree.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 19 samples to treatments.
> Your tree does not contain a node for every sample in your dataset, ignoring tree. Missing tree nodes for: F3D0, F3D1, F3D141, F3D142, F3D143, F3D144, F3D145, F3D146, F3D147, F3D148, F3D149, F3D150, F3D2, F3D3, F3D5, F3D6, F3D7, F3D8, F3D9 .
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
data frame with 0 columns and 0 rows
data frame with 0 columns and 0 rows
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 2425 sequence taxonomies.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 531 otu bins.
Assigned 2425 sequence taxonomies.
Added 2425 sequences.
Assigned 2425 sequence abundances.
Assigned 2425 sequence taxonomies.
Assigned 531 otu bins.
Assigned 2425 asv bins.
Assigned 63 phylotype bins.
Assigned 19 samples to treatments.
Assigned 531 otu bin taxonomies.
Assigned 531 otu bin representative sequences.
Added a metadata report.
Added 2 resource references.
Added a contigs_report report.
Flavor: r-oldrel-windows-x86_64