Last updated on 2026-08-03 21:52:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.15.4 | 129.92 | 73.48 | 203.40 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 2.47 | 218.85 | 221.32 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 358.17 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 186.14 | OK | |||
| r-devel-windows-x86_64 | 1.15.4 | 152.00 | 194.00 | 346.00 | NOTE | |
| r-patched-linux-x86_64 | 1.15.4 | 136.52 | 67.86 | 204.38 | NOTE | |
| r-release-linux-x86_64 | 2.0.1 | 3.33 | 205.22 | 208.55 | OK | |
| r-release-macos-arm64 | 2.0.1 | 1.00 | 67.00 | 68.00 | OK | |
| r-release-macos-x86_64 | 2.0.1 | 3.00 | 195.00 | 198.00 | OK | |
| r-release-windows-x86_64 | 2.0.1 | 7.00 | 129.00 | 136.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | 1.00 | 25.00 | 26.00 | ERROR | |
| r-oldrel-macos-x86_64 | 2.0.1 | 3.00 | 199.00 | 202.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.1 | 8.00 | 166.00 | 174.00 | OK |
Version: 1.15.4
Check: compiled code
Result: NOTE
File ‘rEDM/libs/rEDM.so’:
Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 2.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0JFG5p’ ‘~/tmp/scratch/Rtmp0SooXc’
‘~/tmp/scratch/Rtmp0hSg8g’ ‘~/tmp/scratch/Rtmp153IsK’
‘~/tmp/scratch/Rtmp173SFV’ ‘~/tmp/scratch/Rtmp1FyS2m’
‘~/tmp/scratch/Rtmp1Qi5cH’ ‘~/tmp/scratch/Rtmp1aJWYW’
‘~/tmp/scratch/Rtmp1rJkgt’ ‘~/tmp/scratch/Rtmp1s0mfx’
‘~/tmp/scratch/Rtmp2hbJXj’ ‘~/tmp/scratch/Rtmp3QsXQx’
‘~/tmp/scratch/Rtmp4j0H7j’ ‘~/tmp/scratch/Rtmp4pGlsB’
‘~/tmp/scratch/Rtmp5rqq9L’ ‘~/tmp/scratch/Rtmp5uXzCc’
‘~/tmp/scratch/Rtmp6WSMLX’ ‘~/tmp/scratch/Rtmp6ge6P0’
‘~/tmp/scratch/Rtmp6sXRdn’ ‘~/tmp/scratch/Rtmp73FzTr’
‘~/tmp/scratch/Rtmp7bZtKb’ ‘~/tmp/scratch/Rtmp8h7nh9’
‘~/tmp/scratch/Rtmp8jg1fm’ ‘~/tmp/scratch/Rtmp9EF6wE’
‘~/tmp/scratch/Rtmp9rGoPR’ ‘~/tmp/scratch/RtmpAaORdm’
‘~/tmp/scratch/RtmpBJ8WZG’ ‘~/tmp/scratch/RtmpCPdczO’
‘~/tmp/scratch/RtmpD1qpD5’ ‘~/tmp/scratch/RtmpDPKccj’
‘~/tmp/scratch/RtmpDQbtOn’ ‘~/tmp/scratch/RtmpDrb6TY’
‘~/tmp/scratch/RtmpDxYb1q’ ‘~/tmp/scratch/RtmpEFIcBX’
‘~/tmp/scratch/RtmpEqnkCs’ ‘~/tmp/scratch/RtmpFchuZU’
‘~/tmp/scratch/RtmpFyiktw’ ‘~/tmp/scratch/RtmpHIAXTs’
‘~/tmp/scratch/RtmpHchsoJ’ ‘~/tmp/scratch/RtmpHm1K1T’
‘~/tmp/scratch/RtmpHpXYhn’ ‘~/tmp/scratch/RtmpIeV3gd’
‘~/tmp/scratch/RtmpInJtGl’ ‘~/tmp/scratch/RtmpJR4Cnp’
‘~/tmp/scratch/RtmpJb7ZOn’ ‘~/tmp/scratch/RtmpKVBdIa’
‘~/tmp/scratch/RtmpKylXTq’ ‘~/tmp/scratch/RtmpLAdJfG’
‘~/tmp/scratch/RtmpM5pNjR’ ‘~/tmp/scratch/RtmpMNmKwy’
‘~/tmp/scratch/RtmpMibakZ’ ‘~/tmp/scratch/RtmpNuYTbd’
‘~/tmp/scratch/RtmpOwyb3o’ ‘~/tmp/scratch/RtmpP6so4o’
‘~/tmp/scratch/RtmpPKMVhK’ ‘~/tmp/scratch/RtmpPTyo9h’
‘~/tmp/scratch/RtmpPqrNzF’ ‘~/tmp/scratch/RtmpQObBY3’
‘~/tmp/scratch/RtmpQZeyPF’ ‘~/tmp/scratch/RtmpQk2fsb’
‘~/tmp/scratch/RtmpRIPwmU’ ‘~/tmp/scratch/RtmpRLBAum’
‘~/tmp/scratch/RtmpRkLtLP’ ‘~/tmp/scratch/RtmpRsvCHl’
‘~/tmp/scratch/RtmpS6uyPp’ ‘~/tmp/scratch/RtmpSjtYRI’
‘~/tmp/scratch/RtmpT2pY6i’ ‘~/tmp/scratch/RtmpTAjaR2’
‘~/tmp/scratch/RtmpTMc8aV’ ‘~/tmp/scratch/RtmpTX0L5a’
‘~/tmp/scratch/RtmpTuwY4p’ ‘~/tmp/scratch/RtmpUYRMEk’
‘~/tmp/scratch/RtmpUlfFDh’ ‘~/tmp/scratch/RtmpUxHh6B’
‘~/tmp/scratch/RtmpVGWjtW’ ‘~/tmp/scratch/RtmpVwRgf6’
‘~/tmp/scratch/RtmpW0Gnl4’ ‘~/tmp/scratch/RtmpWR9zk4’
‘~/tmp/scratch/RtmpWU60bd’ ‘~/tmp/scratch/RtmpWV480R’
‘~/tmp/scratch/RtmpWgqFtA’ ‘~/tmp/scratch/RtmpXjhfJp’
‘~/tmp/scratch/RtmpYVqbbb’ ‘~/tmp/scratch/RtmpYXKlCO’
‘~/tmp/scratch/RtmpZiAVOv’ ‘~/tmp/scratch/RtmpaB4fUo’
‘~/tmp/scratch/Rtmpab92Qv’ ‘~/tmp/scratch/RtmpabrIKG’
‘~/tmp/scratch/Rtmpaktd1n’ ‘~/tmp/scratch/Rtmpb9CE0Y’
‘~/tmp/scratch/RtmpcTYul6’ ‘~/tmp/scratch/Rtmpd09JIV’
‘~/tmp/scratch/RtmpeIHh5o’ ‘~/tmp/scratch/Rtmpf55tnx’
‘~/tmp/scratch/RtmpfJHyBQ’ ‘~/tmp/scratch/RtmpfT3ZJU’
‘~/tmp/scratch/RtmpfUqNk2’ ‘~/tmp/scratch/RtmpfkMW5N’
‘~/tmp/scratch/Rtmpg8Gxbn’ ‘~/tmp/scratch/RtmpgQk4Pe’
‘~/tmp/scratch/RtmpgXg9jo’ ‘~/tmp/scratch/RtmpiurqpI’
‘~/tmp/scratch/RtmpjIPyBK’ ‘~/tmp/scratch/RtmpjqByCa’
‘~/tmp/scratch/Rtmpl4Zb1W’ ‘~/tmp/scratch/RtmplAPwKv’
‘~/tmp/scratch/RtmpmNK566’ ‘~/tmp/scratch/RtmpmOqWit’
‘~/tmp/scratch/RtmpmRituB’ ‘~/tmp/scratch/RtmpmWNjQ4’
‘~/tmp/scratch/RtmpnAyhjX’ ‘~/tmp/scratch/RtmpncVH2f’
‘~/tmp/scratch/RtmpoLbJEU’ ‘~/tmp/scratch/RtmpoRRe0b’
‘~/tmp/scratch/RtmpodjtZ3’ ‘~/tmp/scratch/RtmpofVdNc’
‘~/tmp/scratch/RtmponGdvS’ ‘~/tmp/scratch/RtmposUhbD’
‘~/tmp/scratch/Rtmpp6nPhO’ ‘~/tmp/scratch/Rtmppkp06V’
‘~/tmp/scratch/RtmppuZZK0’ ‘~/tmp/scratch/RtmpqIxp38’
‘~/tmp/scratch/RtmpqJJIAP’ ‘~/tmp/scratch/RtmpqRjxoT’
‘~/tmp/scratch/Rtmpqyaifi’ ‘~/tmp/scratch/Rtmpr3X8Pk’
‘~/tmp/scratch/Rtmpr5XCaI’ ‘~/tmp/scratch/RtmprTHnGJ’
‘~/tmp/scratch/RtmprfGD82’ ‘~/tmp/scratch/Rtmprh89nr’
‘~/tmp/scratch/Rtmprqb03q’ ‘~/tmp/scratch/RtmpsK618N’
‘~/tmp/scratch/RtmpsXUT9L’ ‘~/tmp/scratch/Rtmpt93mnP’
‘~/tmp/scratch/Rtmptdl1pb’ ‘~/tmp/scratch/RtmptducYG’
‘~/tmp/scratch/RtmptgfTBm’ ‘~/tmp/scratch/RtmpuYnMsF’
‘~/tmp/scratch/Rtmpv4buUs’ ‘~/tmp/scratch/RtmpvEWG27’
‘~/tmp/scratch/RtmpvW1me9’ ‘~/tmp/scratch/RtmpwYwjui’
‘~/tmp/scratch/RtmpwbwtpE’ ‘~/tmp/scratch/Rtmpwdnokn’
‘~/tmp/scratch/RtmpwvOlnK’ ‘~/tmp/scratch/RtmpwyaBQX’
‘~/tmp/scratch/RtmpxIbGwH’ ‘~/tmp/scratch/RtmpxP42Jg’
‘~/tmp/scratch/Rtmpxc8JmY’ ‘~/tmp/scratch/Rtmpxfm6UL’
‘~/tmp/scratch/Rtmpxrtmpx’ ‘~/tmp/scratch/RtmpzgHY3w’
‘~/tmp/scratch/ccjNy7ME.s’ ‘~/tmp/scratch/xvfb-run.1Aza03’
‘~/tmp/scratch/xvfb-run.1CXrfi’ ‘~/tmp/scratch/xvfb-run.1E7ZQU’
‘~/tmp/scratch/xvfb-run.2zkjEY’ ‘~/tmp/scratch/xvfb-run.5AOzSC’
‘~/tmp/scratch/xvfb-run.5ensZc’ ‘~/tmp/scratch/xvfb-run.7fd3VB’
‘~/tmp/scratch/xvfb-run.8EmXhL’ ‘~/tmp/scratch/xvfb-run.8pGlSL’
‘~/tmp/scratch/xvfb-run.9Ozela’ ‘~/tmp/scratch/xvfb-run.BUH0bY’
‘~/tmp/scratch/xvfb-run.BXsZEj’ ‘~/tmp/scratch/xvfb-run.BxjTDg’
‘~/tmp/scratch/xvfb-run.C8oChr’ ‘~/tmp/scratch/xvfb-run.Cq0FXz’
‘~/tmp/scratch/xvfb-run.DDpn7j’ ‘~/tmp/scratch/xvfb-run.DVIBMq’
‘~/tmp/scratch/xvfb-run.Dn28ze’ ‘~/tmp/scratch/xvfb-run.F3k9zX’
‘~/tmp/scratch/xvfb-run.Fars8i’ ‘~/tmp/scratch/xvfb-run.FiAt7v’
‘~/tmp/scratch/xvfb-run.FjlrM7’ ‘~/tmp/scratch/xvfb-run.GJh2M4’
‘~/tmp/scratch/xvfb-run.GNWhPF’ ‘~/tmp/scratch/xvfb-run.HZ4aEN’
‘~/tmp/scratch/xvfb-run.HehmqX’ ‘~/tmp/scratch/xvfb-run.HiBncP’
‘~/tmp/scratch/xvfb-run.JRqSHf’ ‘~/tmp/scratch/xvfb-run.K5Mx7t’
‘~/tmp/scratch/xvfb-run.KPdYw1’ ‘~/tmp/scratch/xvfb-run.KVTLjh’
‘~/tmp/scratch/xvfb-run.LRBAv6’ ‘~/tmp/scratch/xvfb-run.Mf1NXW’
‘~/tmp/scratch/xvfb-run.MsSv1r’ ‘~/tmp/scratch/xvfb-run.OqFlOJ’
‘~/tmp/scratch/xvfb-run.Ug39Qd’ ‘~/tmp/scratch/xvfb-run.VJvy7x’
‘~/tmp/scratch/xvfb-run.VKlMGp’ ‘~/tmp/scratch/xvfb-run.W5tl0n’
‘~/tmp/scratch/xvfb-run.WO8rqr’ ‘~/tmp/scratch/xvfb-run.X7NrdI’
‘~/tmp/scratch/xvfb-run.XEXuU5’ ‘~/tmp/scratch/xvfb-run.YMiiav’
‘~/tmp/scratch/xvfb-run.YcAFga’ ‘~/tmp/scratch/xvfb-run.Z9fHz6’
‘~/tmp/scratch/xvfb-run.avoK5B’ ‘~/tmp/scratch/xvfb-run.b7B5g1’
‘~/tmp/scratch/xvfb-run.bZ7ugp’ ‘~/tmp/scratch/xvfb-run.dbxlFb’
‘~/tmp/scratch/xvfb-run.eeAuB7’ ‘~/tmp/scratch/xvfb-run.esQDfw’
‘~/tmp/scratch/xvfb-run.f2uWdM’ ‘~/tmp/scratch/xvfb-run.f8aeqn’
‘~/tmp/scratch/xvfb-run.fw4A1O’ ‘~/tmp/scratch/xvfb-run.gAkvzX’
‘~/tmp/scratch/xvfb-run.gxVnkN’ ‘~/tmp/scratch/xvfb-run.hSQ9cZ’
‘~/tmp/scratch/xvfb-run.ipTrVZ’ ‘~/tmp/scratch/xvfb-run.kjKA1V’
‘~/tmp/scratch/xvfb-run.klfQFW’ ‘~/tmp/scratch/xvfb-run.leyr5L’
‘~/tmp/scratch/xvfb-run.mAPZ3P’ ‘~/tmp/scratch/xvfb-run.mU4uKr’
‘~/tmp/scratch/xvfb-run.nJReaU’ ‘~/tmp/scratch/xvfb-run.nUBL1J’
‘~/tmp/scratch/xvfb-run.nqP8OJ’ ‘~/tmp/scratch/xvfb-run.ozrjoo’
‘~/tmp/scratch/xvfb-run.pDYCJR’ ‘~/tmp/scratch/xvfb-run.pyZVgi’
‘~/tmp/scratch/xvfb-run.v3yjTw’ ‘~/tmp/scratch/xvfb-run.yNos23’
‘~/tmp/scratch/xvfb-run.zyHYvZ’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.15.4
Check: compiled code
Result: NOTE
File 'rEDM/libs/x64/rEDM.dll':
Found '_ZSt4cout', possibly from 'std::cout' (C++)
Objects: 'cppEDM/lib/libEDM.a', 'cppEDM/src/libEDM.a'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-x86_64
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘rEDM-tutorial.Rmd’ using rmarkdown
2026-08-04 06:12:11.893 R[41011:59919] XType: Using static font registry.
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: RowCumsum(valid)
2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, verbose = verbose)
3: SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
4: ComputeError(predictions$Observations, predictions$Predictions)
5: SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)$predictions)
6: FUN(X[[i]], ...)
7: lapply(X = S, FUN = FUN, ...)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
14: FUN(X[[i]], ...)
15: lapply(seq_len(cores), inner.do)
16: parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)
17: doTryCatch(return(expr), name, parentenv, handler)
18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
19: tryCatchList(expr, classes, parentenv, handlers)
20: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE), error = function(e) NULL)
21: SweepApply(theta, worker, numProcess)
22: unlist(SweepApply(theta, worker, numProcess))
23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", target = "Thrips_imaginis", lib = "1 73", pred = "1 73", E = E, showPlot = TRUE)
24: eval(expr, envir)
25: eval(expr, envir)
26: withVisible(eval(expr, envir))
27: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
28: eval(call)
29: eval(call)
30: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
31: doWithOneRestart(return(expr), restart)
32: withOneRestart(expr, restarts[[1L]])
33: withRestartList(expr, restarts[-nr])
34: doWithOneRestart(return(expr), restart)
35: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
36: withRestartList(expr, restarts)
37: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
38: evaluate::evaluate(...)
39: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
40: in_dir(input_dir(), expr)
41: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
42: eng_r(options)
43: block_exec(params)
44: call_block(x)
45: process_group(group)
46: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
47: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
49: process_file(text, output)
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
51: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
52: vweave_rmarkdown(...)
53: engine$weave(file, quiet = quiet, encoding = enc)
54: doTryCatch(return(expr), name, parentenv, handler)
55: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
57: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/Rtmp9HkHuG/file6ac97f8f208b.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: RowCumsum(valid)
2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, verbose = verbose)
3: SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
4: ComputeError(predictions$Observations, predictions$Predictions)
5: SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)$predictions)
6: FUN(X[[i]], ...)
7: lapply(X = S, FUN = FUN, ...)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
14: FUN(X[[i]], ...)
15: lapply(seq_len(cores), inner.do)
16: parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)
17: doTryCatch(return(expr), name, parentenv, handler)
18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
19: tryCatchList(expr, classes, parentenv, handlers)
20: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE), error = function(e) NULL)
21: SweepApply(theta, worker, numProcess)
22: unlist(SweepApply(theta, worker, numProcess))
23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", target = "Thrips_imaginis", lib = "1 73", pred = "1 73", E = E, showPlot = TRUE)
24: eval(expr, envir)
25: eval(expr, envir)
26: withVisible(eval(expr, envir))
27: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
28: eval(call)
29: eval(call)
30: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
31: doWithOneRestart(return(expr), restart)
32: withOneRestart(expr, restarts[[1L]])
33: withRestartList(expr, restarts[-nr])
34: doWithOneRestart(return(expr), restart)
35: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
36: withRestartList(expr, restarts)
37: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
38: evaluate::evaluate(...)
39: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include)
Traceback:
1: RowCumsum(valid)
2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, 0L else 2L verbose = verbose)
3: SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, }, output_handler = knit_handlers(options$render, options))
embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
40: 4: ComputeError(predictions$Observations, predictions$Predictions)
5: SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)$predictions)
6: FUN(X[[i]], ...)
7: lapply(X = S, FUN = FUN, ...)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)in_dir(input_dir(), expr)
11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) {41: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } if (options$error && options$include) invisible(structure(msg, class = "try-error", condition = e))})
12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
14: FUN(X[[i]], ...)
15: lapply(seq_len(cores), inner.do)
16: parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)
17: doTryCatch(return(expr), name, parentenv, handler)
18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
19: tryCatchList(expr, classes, parentenv, handlers)
20: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE), error = function(e) NULL)
21: 0L else 2L }, output_handler = knit_handlers(options$render, options)))
42: eng_r(options)
43: block_exec(params)
44: call_block(x)
45: process_group(group)
46: SweepApply(theta, worker, numProcess)withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
22: unlist(SweepApply(theta, worker, numProcess))
23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", target = "Thrips_imaginis", lib = "1 73", pred = "1 73", E = E, showPlot = TRUE)
24: eval(expr, envir)
25: eval(expr, envir)
26: withVisible(eval(expr, envir))
27: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
47: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
28: eval(call)
pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) 29: eval(call)
30: error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE49: process_file(text, output)
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
}, handlers)
31: doWithOneRestart(return(expr), restart)
32: withOneRestart(expr, restarts[[1L]])
33: withRestartList(expr, restarts[-nr])
34: doWithOneRestart(return(expr), restart)
35: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
36: withRestartList(expr, restarts)51:
rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), 37: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()
Traceback:
watcher$print_value(ev$value, ev$visible, envir) 1: RowCumsum(valid)
2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, verbose = verbose)
3: output_dir = getwd(), ...)SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
4: ComputeError(predictions$Observations, predictions$Predictions) }
TRUE52: 5: vweave_rmarkdown(...)
53: engine$weave(file, quiet = quiet, encoding = enc)
}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
38: evaluate::evaluate(...)
39: SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
40: in_dir(input_dir(), expr)
41: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L54: doTryCatch(return(expr), name, parentenv, handler)
55: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
57: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", else 2L }, output_handler = knit_handlers(options$render, options)))
42: eng_r(options)
43: block_exec(params)
44: call_block(x)
45: process_group(group)
46: engine = engine)withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) error = function(e) {
embedded = embedded, validLib = validLib, noTime = noTime, if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) ignoreNan = ignoreNan, backend = backend)$predictions)58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/Rtmp9HkHuG/file6ac97f8f208b.rds")
An irrecoverable exception occurred. R is aborting now ...
error <<- format(e) })
47: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {
6: FUN(X[[i]], ...)
7: lapply(X = S, FUN = FUN, ...)
if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) 8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
14: FUN(X[[i]], ...)
15: 49: process_file(text, output)
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
51: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)lapply(seq_len(cores), inner.do)
16: parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)
17: doTryCatch(return(expr), name, parentenv, handler)
18:
52: vweave_rmarkdown(...)
53: engine$weave(file, quiet = quiet, encoding = enc)tryCatchOne(expr, names, parentenv, handlers[[1L]])
19: tryCatchList(expr, classes, parentenv, handlers)
54: doTryCatch(return(expr), name, parentenv, handler)
20:
55: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE), error = function(e) NULL)
21: SweepApply(theta, worker, numProcess)
22: unlist(SweepApply(theta, worker, numProcess))
23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", target = "Thrips_imaginis", lib = "1 73", pred = "1 73", E = E, showPlot = TRUE)
24: eval(expr, envir)
tryCatchList(expr, classes, parentenv, handlers)25:
57: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)eval(expr, envir)
26: withVisible(eval(expr, envir))
27: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage")}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
28: eval(call)
skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/Rtmp9HkHuG/file6ac97f8f208b.rds")
An irrecoverable exception occurred. R is aborting now ...
29: eval(call)
30: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
31: doWithOneRestart(return(expr), restart)
32: withOneRestart(expr, restarts[[1L]])
33: withRestartList(expr, restarts[-nr])
34: doWithOneRestart(return(expr), restart)
35: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
36: withRestartList(expr, restarts)
37: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
38: evaluate::evaluate(...)
39: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
40: in_dir(input_dir(), expr)
41: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
42: eng_r(options)
43: block_exec(params)
44: call_block(x)
45: process_group(group)
46: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
47: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
49: process_file(text, output)
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
51: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
52: vweave_rmarkdown(...)
53: engine$weave(file, quiet = quiet, encoding = enc)
54: doTryCatch(return(expr), name, parentenv, handler)
55: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
57: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/Rtmp9HkHuG/file6ac97f8f208b.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from rEDM-tutorial.Rmd:466-469 [smap_thrips]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 15, 0
---
Backtrace:
▆
1. └─rEDM::PredictNonlinear(...)
2. └─base::data.frame(Theta = theta, rho = rho)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rEDM-tutorial.Rmd' failed with diagnostics:
arguments imply differing number of rows: 15, 0
--- failed re-building ‘rEDM-tutorial.Rmd’
SUMMARY: processing the following file failed:
‘rEDM-tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64