Last updated on 2024-08-15 20:48:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.2 | 8.56 | 158.71 | 167.27 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3.2 | 6.92 | 110.79 | 117.71 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.2 | 266.18 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.2 | 400.71 | OK | |||
| r-devel-windows-x86_64 | 1.3.2 | 14.00 | 170.00 | 184.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3.2 | 16.54 | 150.32 | 166.86 | ERROR | |
| r-release-linux-x86_64 | 1.3.2 | 9.11 | 154.12 | 163.23 | ERROR | |
| r-release-macos-arm64 | 1.3.2 | 105.00 | OK | |||
| r-release-macos-x86_64 | 1.3.2 | 162.00 | OK | |||
| r-release-windows-x86_64 | 1.3.2 | 12.00 | 167.00 | 179.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.3.2 | 97.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3.2 | 217.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3.2 | 18.00 | 212.00 | 230.00 | ERROR |
Version: 1.3.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
bar_error.Rd: gf_summary
bland_altman.Rd: gf_point
box_plot.Rd: gf_boxplot
gf_star.Rd: gf_text
hist_norm.Rd: gf_dhistogram
mhor.Rd: mh
qq_plot.Rd: gf_qq, gf_line
strip_error.Rd: gf_point, gf_jitter
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Vanderpump 4.507 0.004 5.818
Bernard 4.311 0.172 5.941
Rothman 4.245 0.047 5.421
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11507 bytes
Input file size = 11597 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9715
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9715
Output IDAT size = 9715 bytes (1792 bytes decrease)
Output file size = 9793 bytes (1804 bytes = 15.56% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12084 bytes
Input file size = 12174 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10048
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10048
Output IDAT size = 10048 bytes (2036 bytes decrease)
Output file size = 10126 bytes (2048 bytes = 16.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10075 bytes
Input file size = 10165 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9095
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8982
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8982
Output IDAT size = 8982 bytes (1093 bytes decrease)
Output file size = 9060 bytes (1105 bytes = 10.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10338 bytes
Input file size = 10428 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9242
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9229
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9229
Output IDAT size = 9229 bytes (1109 bytes decrease)
Output file size = 9307 bytes (1121 bytes = 10.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12791 bytes
Input file size = 12881 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10832
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10832
Output IDAT size = 10832 bytes (1959 bytes decrease)
Output file size = 10910 bytes (1971 bytes = 15.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13752 bytes
Input file size = 13842 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11701
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11701
Output IDAT size = 11701 bytes (2051 bytes decrease)
Output file size = 11779 bytes (2063 bytes = 14.90% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15195 bytes
Input file size = 15285 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11845
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11845
Output IDAT size = 11845 bytes (3350 bytes decrease)
Output file size = 11923 bytes (3362 bytes = 22.00% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11480 bytes
Input file size = 11570 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9662
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9662
Output IDAT size = 9662 bytes (1818 bytes decrease)
Output file size = 9740 bytes (1830 bytes = 15.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12026 bytes
Input file size = 12116 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10031
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10031
Output IDAT size = 10031 bytes (1995 bytes decrease)
Output file size = 10109 bytes (2007 bytes = 16.56% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10055 bytes
Input file size = 10145 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9170
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8946
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8946
Output IDAT size = 8946 bytes (1109 bytes decrease)
Output file size = 9024 bytes (1121 bytes = 11.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10332 bytes
Input file size = 10422 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9222
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9222
Output IDAT size = 9222 bytes (1110 bytes decrease)
Output file size = 9300 bytes (1122 bytes = 10.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13096 bytes
Input file size = 13186 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11186
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11186
Output IDAT size = 11186 bytes (1910 bytes decrease)
Output file size = 11264 bytes (1922 bytes = 14.58% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13950 bytes
Input file size = 14040 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12016
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12016
Output IDAT size = 12016 bytes (1934 bytes decrease)
Output file size = 12094 bytes (1946 bytes = 13.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15266 bytes
Input file size = 15356 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11935
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11935
Output IDAT size = 11935 bytes (3331 bytes decrease)
Output file size = 12013 bytes (3343 bytes = 21.77% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11505 bytes
Input file size = 11595 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9711
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9711
Output IDAT size = 9711 bytes (1794 bytes decrease)
Output file size = 9789 bytes (1806 bytes = 15.58% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12014 bytes
Input file size = 12104 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10001
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10001
Output IDAT size = 10001 bytes (2013 bytes decrease)
Output file size = 10079 bytes (2025 bytes = 16.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10117 bytes
Input file size = 10207 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9161
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9010
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9010
Output IDAT size = 9010 bytes (1107 bytes decrease)
Output file size = 9088 bytes (1119 bytes = 10.96% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10308 bytes
Input file size = 10398 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9224
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9200
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9200
Output IDAT size = 9200 bytes (1108 bytes decrease)
Output file size = 9278 bytes (1120 bytes = 10.77% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13029 bytes
Input file size = 13119 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11177
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11177
Output IDAT size = 11177 bytes (1852 bytes decrease)
Output file size = 11255 bytes (1864 bytes = 14.21% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13927 bytes
Input file size = 14017 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11975
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11975
Output IDAT size = 11975 bytes (1952 bytes decrease)
Output file size = 12053 bytes (1964 bytes = 14.01% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15237 bytes
Input file size = 15327 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11888
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11888
Output IDAT size = 11888 bytes (3349 bytes decrease)
Output file size = 11966 bytes (3361 bytes = 21.93% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building 'introduction.Rmd'
--- re-building 'regression.Rmd' using rmarkdown
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building 'regression.Rmd'
SUMMARY: processing the following files failed:
'introduction.Rmd' 'regression.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11438 bytes
Input file size = 11528 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9667
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9667
Output IDAT size = 9667 bytes (1771 bytes decrease)
Output file size = 9745 bytes (1783 bytes = 15.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12068 bytes
Input file size = 12158 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10054
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10054
Output IDAT size = 10054 bytes (2014 bytes decrease)
Output file size = 10132 bytes (2026 bytes = 16.66% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10077 bytes
Input file size = 10167 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9166
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8971
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8971
Output IDAT size = 8971 bytes (1106 bytes decrease)
Output file size = 9049 bytes (1118 bytes = 11.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10347 bytes
Input file size = 10437 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9233
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9230
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9230
Output IDAT size = 9230 bytes (1117 bytes decrease)
Output file size = 9308 bytes (1129 bytes = 10.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13094 bytes
Input file size = 13184 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11184
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11184
Output IDAT size = 11184 bytes (1910 bytes decrease)
Output file size = 11262 bytes (1922 bytes = 14.58% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13917 bytes
Input file size = 14007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11938
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11938
Output IDAT size = 11938 bytes (1979 bytes decrease)
Output file size = 12016 bytes (1991 bytes = 14.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15184 bytes
Input file size = 15274 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11898
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11898
Output IDAT size = 11898 bytes (3286 bytes decrease)
Output file size = 11976 bytes (3298 bytes = 21.59% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11494 bytes
Input file size = 11584 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672
Output IDAT size = 9672 bytes (1822 bytes decrease)
Output file size = 9750 bytes (1834 bytes = 15.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11992 bytes
Input file size = 12082 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9950
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9950
Output IDAT size = 9950 bytes (2042 bytes decrease)
Output file size = 10028 bytes (2054 bytes = 17.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10108 bytes
Input file size = 10198 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9144
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9012
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9012
Output IDAT size = 9012 bytes (1096 bytes decrease)
Output file size = 9090 bytes (1108 bytes = 10.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10331 bytes
Input file size = 10421 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9223
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9211
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9211
Output IDAT size = 9211 bytes (1120 bytes decrease)
Output file size = 9289 bytes (1132 bytes = 10.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12826 bytes
Input file size = 12916 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10897
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10897
Output IDAT size = 10897 bytes (1929 bytes decrease)
Output file size = 10975 bytes (1941 bytes = 15.03% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13863 bytes
Input file size = 13953 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11851
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11851
Output IDAT size = 11851 bytes (2012 bytes decrease)
Output file size = 11929 bytes (2024 bytes = 14.51% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15265 bytes
Input file size = 15355 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11917
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11917
Output IDAT size = 11917 bytes (3348 bytes decrease)
Output file size = 11995 bytes (3360 bytes = 21.88% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64