Last updated on 2026-05-11 21:49:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.0 | 12.98 | 93.60 | 106.58 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6.0 | 7.80 | 77.53 | 85.33 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.0 | 21.00 | 144.95 | 165.95 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.6.0 | 20.00 | 150.01 | 170.01 | OK | |
| r-devel-windows-x86_64 | 0.6.0 | 12.00 | 172.00 | 184.00 | ERROR | |
| r-patched-linux-x86_64 | 0.6.0 | 12.75 | 81.07 | 93.82 | OK | |
| r-release-linux-x86_64 | 0.6.0 | 9.75 | 84.31 | 94.06 | OK | |
| r-release-macos-arm64 | 0.6.0 | 3.00 | 25.00 | 28.00 | OK | |
| r-release-macos-x86_64 | 0.6.0 | 8.00 | 89.00 | 97.00 | OK | |
| r-release-windows-x86_64 | 0.6.0 | 14.00 | 117.00 | 131.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.6.0 | 8.00 | 146.00 | 154.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.0 | 13.00 | 137.00 | 150.00 | OK |
Version: 0.6.0
Check: examples
Result: ERROR
Running examples in ‘nexus-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hist
> ### Title: Histogram of Compositional Data
> ### Aliases: hist hist,CompositionMatrix-method
>
> ### ** Examples
>
> ## Data from Aitchison 1986
> data("hongite")
>
> ## Coerce to compositional data
> coda <- as_composition(hongite)
>
> ## Boxplot plot
> hist(coda, select = "A")
Warning in sprintf(tr_("<%s> instance initialization:\n%s"), class(object), :
restarting interrupted promise evaluation
Error: <NumericMatrix> instance initialization:
* evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [4s/4s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ ## Force tests to be executed if in dev release
+ ## (which we define as having a sub-release)
+ NOT_CRAN <- length(unclass(packageVersion("nexus"))[[1]]) == 4
+
+ tinytest::test_package("nexus", at_home = NOT_CRAN)
+ }
Loading required package: dimensio
test_chemistry.R.............. 0 tests
test_chemistry.R.............. 0 tests
test_chemistry.R.............. 0 tests
test_chemistry.R.............. 1 tests OK
test_chemistry.R.............. 2 tests OK
test_chemistry.R.............. 3 tests OK
test_chemistry.R.............. 4 tests OK
test_chemistry.R.............. 5 tests OK
test_chemistry.R.............. 5 tests OK
test_chemistry.R.............. 6 tests OK
test_chemistry.R.............. 7 tests OK 94ms
test_coerce.R................. 0 tests
test_coerce.R................. 0 tests
test_coerce.R................. 0 tests
test_coerce.R................. 0 tests
test_coerce.R................. 1 tests OK 56ms
test_condense.R............... 0 tests
test_condense.R............... 0 tests
test_condense.R............... 0 tests
test_condense.R............... 0 tests
test_condense.R............... 1 tests OK
test_condense.R............... 2 tests OK
test_condense.R............... 2 tests OK
test_condense.R............... 2 tests OK
test_condense.R............... 3 tests OK
test_condense.R............... 3 tests OK
test_condense.R............... 4 tests OK
test_condense.R............... 5 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 7 tests OK 0.8s
test_describe.R............... 0 tests
test_describe.R............... 0 tests
test_describe.R............... 0 tests
test_describe.R............... 0 tests
test_describe.R............... 1 tests OK
test_describe.R............... 2 tests OK
test_describe.R............... 2 tests OK
test_describe.R............... 3 tests OK
test_describe.R............... 4 tests OK 0.6s
test_dist.R................... 0 tests
test_dist.R................... 0 tests
test_dist.R................... 0 tests
test_dist.R................... 1 tests OK
test_dist.R................... 2 tests OK 44ms
test_group.R.................. 0 tests
test_group.R.................. 0 tests
test_group.R.................. 0 tests
test_group.R.................. 1 tests OK
test_group.R.................. 1 tests OK
test_group.R.................. 2 tests OK
test_group.R.................. 3 tests OK
test_group.R.................. 4 tests OK
test_group.R.................. 5 tests OK
test_group.R.................. 6 tests OK
test_group.R.................. 7 tests OK
test_group.R.................. 8 tests OK
test_group.R.................. 9 tests OK
test_group.R.................. 10 tests OK
test_group.R.................. 11 tests OK
test_group.R.................. 12 tests OK
test_group.R.................. 13 tests OK
test_group.R.................. 14 tests OK
test_group.R.................. 15 tests OK
test_group.R.................. 16 tests OK
test_group.R.................. 17 tests OK 0.1s
test_mutators.R............... 0 tests
test_mutators.R............... 0 tests
test_mutators.R............... 0 tests
test_mutators.R............... 1 tests OK
test_mutators.R............... 1 tests OK
test_mutators.R............... 2 tests OK
test_mutators.R............... 3 tests OK
test_mutators.R............... 4 tests OK 7ms
test_outliers.R............... 0 tests
test_outliers.R............... 0 tests
test_outliers.R............... 0 tests
test_outliers.R............... 0 tests
test_outliers.R............... 1 tests OK
test_outliers.R............... 2 tests OK
test_outliers.R............... 2 tests OK 12ms
test_packages.R............... 0 tests 7ms
test_pca.R.................... 0 tests
test_pca.R.................... 0 tests
test_pca.R.................... 0 tests
test_pca.R.................... 1 tests OK 16ms
test_plot.R................... 0 tests
test_plot.R................... 0 tests 8ms
test_replace.R................ 0 tests
test_replace.R................ 0 tests
test_replace.R................ 0 tests
test_replace.R................ 1 tests OK
test_replace.R................ 2 tests OK
test_replace.R................ 3 tests OK
test_replace.R................ 4 tests OK
test_replace.R................ 5 tests OK
test_replace.R................ 6 tests OK
test_replace.R................ 7 tests OK
test_replace.R................ 7 tests OK
test_replace.R................ 8 tests OK
test_replace.R................ 8 tests OK
test_replace.R................ 8 tests OK
test_replace.R................ 9 tests OK
test_replace.R................ 10 tests OK
test_replace.R................ 11 tests OK
test_replace.R................ 12 tests OK
test_replace.R................ 13 tests OK
test_replace.R................ 14 tests OK
test_replace.R................ 15 tests OK
test_replace.R................ 15 tests OK
test_replace.R................ 16 tests OK
test_replace.R................ 16 tests OK
test_replace.R................ 17 tests OK 0.1s
test_simplex.R................ 0 tests
test_simplex.R................ 0 tests
test_simplex.R................ 0 tests
test_simplex.R................ 1 tests OK
test_simplex.R................ 2 tests OK
test_simplex.R................ 3 tests OK
test_simplex.R................ 4 tests OK
test_simplex.R................ 5 tests OK
test_simplex.R................ 6 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 8 tests OK
test_simplex.R................ 9 tests OK
test_simplex.R................ 10 tests OK
test_simplex.R................ 11 tests OK
test_simplex.R................ 12 tests OK
test_simplex.R................ 13 tests OK
test_simplex.R................ 13 tests OK
test_simplex.R................ 13 tests OK
test_simplex.R................ 14 tests OK 0.1s
test_statistics.R............. 0 tests
test_statistics.R............. 0 tests
test_statistics.R............. 0 tests
test_statistics.R............. 1 tests OK
test_statistics.R............. 2 tests OK
test_statistics.R............. 3 tests OK
test_statistics.R............. 4 tests OK
test_statistics.R............. 5 tests OK
test_statistics.R............. 5 tests OK
test_statistics.R............. 5 tests OK
test_statistics.R............. 6 tests OK Error: <NumericMatrix> instance initialization:
* node stack overflow
In addition: Warning message:
In sprintf(tr_("<%s> instance initialization:\n%s"), class(object), :
restarting interrupted promise evaluation
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘groups.Rmd’ using knitr
--- finished re-building ‘groups.Rmd’
--- re-building ‘nexus.Rmd’ using knitr
Quitting from nexus.Rmd:142-146 [histogram]
Error: processing vignette 'nexus.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building ‘nexus.Rmd’
SUMMARY: processing the following file failed:
‘nexus.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.0
Check: examples
Result: ERROR
Running examples in 'nexus-Ex.R' failed
The error most likely occurred in:
> ### Name: hist
> ### Title: Histogram of Compositional Data
> ### Aliases: hist hist,CompositionMatrix-method
>
> ### ** Examples
>
> ## Data from Aitchison 1986
> data("hongite")
>
> ## Coerce to compositional data
> coda <- as_composition(hongite)
>
> ## Boxplot plot
> hist(coda, select = "A")
Warning in sprintf(tr_("<%s> instance initialization:\n%s"), class(object), :
restarting interrupted promise evaluation
Error: <NumericMatrix> instance initialization:
* evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.6.0
Check: tests
Result: ERROR
Running 'tinytest.R' [5s]
Running the tests in 'tests/tinytest.R' failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ ## Force tests to be executed if in dev release
+ ## (which we define as having a sub-release)
+ NOT_CRAN <- length(unclass(packageVersion("nexus"))[[1]]) == 4
+
+ tinytest::test_package("nexus", at_home = NOT_CRAN)
+ }
Loading required package: dimensio
test_chemistry.R.............. 0 tests
test_chemistry.R.............. 0 tests
test_chemistry.R.............. 0 tests
test_chemistry.R.............. 1 tests OK
test_chemistry.R.............. 2 tests OK
test_chemistry.R.............. 3 tests OK
test_chemistry.R.............. 4 tests OK
test_chemistry.R.............. 5 tests OK
test_chemistry.R.............. 5 tests OK
test_chemistry.R.............. 6 tests OK
test_chemistry.R.............. 7 tests OK 0.1s
test_coerce.R................. 0 tests
test_coerce.R................. 0 tests
test_coerce.R................. 0 tests
test_coerce.R................. 0 tests
test_coerce.R................. 1 tests OK 55ms
test_condense.R............... 0 tests
test_condense.R............... 0 tests
test_condense.R............... 0 tests
test_condense.R............... 0 tests
test_condense.R............... 1 tests OK
test_condense.R............... 2 tests OK
test_condense.R............... 2 tests OK
test_condense.R............... 2 tests OK
test_condense.R............... 3 tests OK
test_condense.R............... 3 tests OK
test_condense.R............... 4 tests OK
test_condense.R............... 5 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 6 tests OK
test_condense.R............... 7 tests OK 0.8s
test_describe.R............... 0 tests
test_describe.R............... 0 tests
test_describe.R............... 0 tests
test_describe.R............... 0 tests
test_describe.R............... 1 tests OK
test_describe.R............... 2 tests OK
test_describe.R............... 2 tests OK
test_describe.R............... 3 tests OK
test_describe.R............... 4 tests OK 0.5s
test_dist.R................... 0 tests
test_dist.R................... 0 tests
test_dist.R................... 0 tests
test_dist.R................... 1 tests OK
test_dist.R................... 2 tests OK 28ms
test_group.R.................. 0 tests
test_group.R.................. 0 tests
test_group.R.................. 0 tests
test_group.R.................. 1 tests OK
test_group.R.................. 1 tests OK
test_group.R.................. 2 tests OK
test_group.R.................. 3 tests OK
test_group.R.................. 4 tests OK
test_group.R.................. 5 tests OK
test_group.R.................. 6 tests OK
test_group.R.................. 7 tests OK
test_group.R.................. 8 tests OK
test_group.R.................. 9 tests OK
test_group.R.................. 10 tests OK
test_group.R.................. 11 tests OK
test_group.R.................. 12 tests OK
test_group.R.................. 13 tests OK
test_group.R.................. 14 tests OK
test_group.R.................. 15 tests OK
test_group.R.................. 16 tests OK
test_group.R.................. 17 tests OK 0.1s
test_mutators.R............... 0 tests
test_mutators.R............... 0 tests
test_mutators.R............... 0 tests
test_mutators.R............... 1 tests OK
test_mutators.R............... 1 tests OK
test_mutators.R............... 2 tests OK
test_mutators.R............... 3 tests OK
test_mutators.R............... 4 tests OK 9ms
test_outliers.R............... 0 tests
test_outliers.R............... 0 tests
test_outliers.R............... 0 tests
test_outliers.R............... 0 tests
test_outliers.R............... 1 tests OK
test_outliers.R............... 2 tests OK
test_outliers.R............... 2 tests OK 18ms
test_packages.R............... 0 tests 4ms
test_pca.R.................... 0 tests
test_pca.R.................... 0 tests
test_pca.R.................... 0 tests
test_pca.R.................... 1 tests OK 24ms
test_plot.R................... 0 tests
test_plot.R................... 0 tests 3ms
test_replace.R................ 0 tests
test_replace.R................ 0 tests
test_replace.R................ 0 tests
test_replace.R................ 1 tests OK
test_replace.R................ 2 tests OK
test_replace.R................ 3 tests OK
test_replace.R................ 4 tests OK
test_replace.R................ 5 tests OK
test_replace.R................ 6 tests OK
test_replace.R................ 7 tests OK
test_replace.R................ 7 tests OK
test_replace.R................ 8 tests OK
test_replace.R................ 8 tests OK
test_replace.R................ 8 tests OK
test_replace.R................ 9 tests OK
test_replace.R................ 10 tests OK
test_replace.R................ 11 tests OK
test_replace.R................ 12 tests OK
test_replace.R................ 13 tests OK
test_replace.R................ 14 tests OK
test_replace.R................ 15 tests OK
test_replace.R................ 15 tests OK
test_replace.R................ 16 tests OK
test_replace.R................ 16 tests OK
test_replace.R................ 17 tests OK 0.2s
test_simplex.R................ 0 tests
test_simplex.R................ 0 tests
test_simplex.R................ 0 tests
test_simplex.R................ 1 tests OK
test_simplex.R................ 2 tests OK
test_simplex.R................ 3 tests OK
test_simplex.R................ 4 tests OK
test_simplex.R................ 5 tests OK
test_simplex.R................ 6 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 7 tests OK
test_simplex.R................ 8 tests OK
test_simplex.R................ 9 tests OK
test_simplex.R................ 10 tests OK
test_simplex.R................ 11 tests OK
test_simplex.R................ 12 tests OK
test_simplex.R................ 13 tests OK
test_simplex.R................ 13 tests OK
test_simplex.R................ 13 tests OK
test_simplex.R................ 14 tests OK 0.1s
test_statistics.R............. 0 tests
test_statistics.R............. 0 tests
test_statistics.R............. 0 tests
test_statistics.R............. 1 tests OK
test_statistics.R............. 2 tests OK
test_statistics.R............. 3 tests OK
test_statistics.R............. 4 tests OK
test_statistics.R............. 5 tests OK
test_statistics.R............. 5 tests OK
test_statistics.R............. 5 tests OK
test_statistics.R............. 6 tests OK Error: <NumericMatrix> instance initialization:
* node stack overflow
In addition: Warning message:
In sprintf(tr_("<%s> instance initialization:\n%s"), class(object), :
restarting interrupted promise evaluation
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'groups.Rmd' using knitr
--- finished re-building 'groups.Rmd'
--- re-building 'nexus.Rmd' using knitr
Quitting from nexus.Rmd:142-146 [histogram]
Error: processing vignette 'nexus.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building 'nexus.Rmd'
SUMMARY: processing the following file failed:
'nexus.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64