Last updated on 2026-06-07 21:51:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.8.25 | 13.09 | 154.37 | 167.46 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.8.25 | 9.99 | 107.11 | 117.10 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.8.25 | 26.00 | 237.90 | 263.90 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.8.25 | 25.00 | 248.47 | 273.47 | OK | |
| r-devel-windows-x86_64 | 1.8.25 | 18.00 | 196.00 | 214.00 | OK | |
| r-patched-linux-x86_64 | 1.8.25 | 19.53 | 146.44 | 165.97 | OK | |
| r-release-linux-x86_64 | 1.8.25 | 14.14 | 148.01 | 162.15 | OK | |
| r-release-macos-arm64 | 1.8.25 | 4.00 | 41.00 | 45.00 | OK | |
| r-release-macos-x86_64 | 1.8.25 | 10.00 | 175.00 | 185.00 | OK | |
| r-release-windows-x86_64 | 1.8.25 | 19.00 | 192.00 | 211.00 | OK | |
| r-oldrel-macos-arm64 | 1.8.25 | OK | ||||
| r-oldrel-macos-x86_64 | 1.8.25 | 9.00 | 155.00 | 164.00 | OK | |
| r-oldrel-windows-x86_64 | 1.8.25 | 24.00 | 235.00 | 259.00 | OK |
Version: 1.8.25
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Gregory Jefferis <jefferis@gmail.com>’
Reading Rd files failed with message:
cannot open the connection
Problems when formatting CITATION entries:
cannot open file '/tmp/RtmpU73rIt/Rf3fe72c17abe14': No space left on device
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.8.25
Check: tests
Result: ERROR
Running ‘test-all.R’ [22s/28s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> library(nat)
Loading required package: rgl
Registered S3 method overwritten by 'nat':
method from
as.mesh3d.ashape3d rgl
Some nat functions depend on a CMTK installation. See ?cmtk and README.md for details.
Attaching package: 'nat'
The following objects are masked from 'package:base':
intersect, setdiff, union
> library(httr)
>
> # suppress RGL in headless environments (some CRAN build machines fail otherwise)
> if(!interactive())
+ Sys.setenv(RGL_USE_NULL=TRUE)
>
> # Is internet accessible?
> internet.ok = identical(
+ try(
+ status_code(
+ HEAD("http://flybrain.mrc-lmb.cam.ac.uk/", timeout(2))
+ ),
+ silent = TRUE
+ ),
+ 200L
+ )
>
> if(Sys.getenv('NOT_CRAN') == "true" && internet.ok) {
+ # note that we want to run all tests requiring internet access
+ Sys.setenv(NAT_INTERNET_TESTS="TRUE")
+ # Run all test files
+ test_check("nat")
+ } else {
+ # We're on CRAN or flybrain is inacessible, so don't run anything involving
+ # remote files
+ Sys.setenv(NAT_INTERNET_TESTS="")
+ test_check("nat", filter="^[^.]+")
+ }
adding: testdata/neuron/testneuron_am3d.am (deflated 45%)
adding: testdata/neuron/testneuron_lineset.am (deflated 69%)
adding: DA1/EBH11R.swc (deflated 53%)
adding: DA1/EBH20R.swc (deflated 54%)
adding: DA1/EBI12L.swc (deflated 54%)
adding: DL3/EBH20L.swc (deflated 54%)
adding: DL3/EBI22R.swc (deflated 53%)
Saving _problems/test-neuronlistfh-54.R
[ FAIL 1 | WARN 4 | SKIP 7 | PASS 785 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-cmtk.R:23:1', 'test-cmtkreg.R:58:3', 'test-ndigest.R:9:3'
• empty test (4): 'test-neuron-io.R:992:1', 'test-neuronlist.R:90:1',
'test-potential_synapses.R:3:1',
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-neuronlistfh.R:54:3'): we can load a previously created on disk neuronlistfh representation ──
Error in `.local(db, key, value, ...)`: unable to insert object '1cba713a5da299980a580959163bb482'
Backtrace:
▆
1. ├─nat::as.neuronlistfh(...) at test-neuronlistfh.R:54:3
2. └─nat:::as.neuronlistfh.neuronlist(...)
3. └─filehash::dumpList(x, dbName = dbdir, type = dbClass)
4. ├─filehash::dbInsert(db, vnames[i], data[[vnames[i]]])
5. └─filehash::dbInsert(db, vnames[i], data[[vnames[i]]])
6. └─filehash (local) .local(db, key, value, ...)
[ FAIL 1 | WARN 4 | SKIP 7 | PASS 785 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc