Last updated on 2023-03-21 19:57:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.3 | 6.92 | 95.38 | 102.30 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.1.3 | 6.78 | 74.49 | 81.27 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.3 | 158.68 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.3 | 164.99 | OK | |||
| r-patched-linux-x86_64 | 2.1.3 | 8.61 | 114.69 | 123.30 | OK | |
| r-release-linux-x86_64 | 2.1.3 | 7.78 | 115.49 | 123.27 | OK | |
| r-release-macos-arm64 | 2.1.3 | 42.00 | OK | |||
| r-release-macos-x86_64 | 2.1.3 | 60.00 | OK | |||
| r-release-windows-x86_64 | 2.1.3 | 24.00 | 161.00 | 185.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.3 | 59.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.3 | 65.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2.1.3 | 18.00 | 171.00 | 189.00 | OK |
Version: 2.1.3
Check: examples
Result: ERROR
Running examples in ‘missRanger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: missRanger
> ### Title: Fast Imputation of Missing Values by Chained Random Forests
> ### Aliases: missRanger
>
> ### ** Examples
>
> irisWithNA <- generateNA(iris, seed = 34)
> irisImputed <- missRanger(irisWithNA, pmm.k = 3, num.trees = 100)
Missing value imputation by random forests
Variables to impute: Sepal.Length, Sepal.Width, Petal.Length, Petal.Width, Species
Variables used to impute: Sepal.Length, Sepal.Width, Petal.Length, Petal.Width, Species
iter 1: .Error in get.knnx(data, query, k, algorithm) :
DLL requires the use of native symbols
Calls: missRanger -> pmm -> knnx.index -> get.knnx
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(missRanger)
>
> test_check("missRanger")
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 46 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-missRanger.R:6:3'): all missings are filled ────────────────────
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:6:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-missRanger.R:44:3'): pmm.k works regarding value range in double columns ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:44:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-missRanger.R:52:3'): pmm.k works regarding value range in integer columns ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:52:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-missRanger.R:76:3'): formula interface works with unspecified left side ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:76:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:4:3'): pmm picks the right reference based on numeric values ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:4:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:12:3'): pmm picks the right reference based on logical values ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:12:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:19:3'): pmm picks the right reference based on character values ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:19:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:26:3'): pmm picks the right reference based on a factor ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:26:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:35:3'): pmm picks the right reference based on date vector ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:35:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(xtrain, xquery, ytrain = 1:2)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 46 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘censored_variables.Rmd’ using rmarkdown
Quitting from lines 49-82 (censored_variables.Rmd)
Error: processing vignette ‘censored_variables.Rmd’ failed with diagnostics:
DLL requires the use of native symbols
--- failed re-building ‘censored_variables.Rmd’
--- re-building ‘missRanger.Rmd’ using rmarkdown
Quitting from lines 81-82 (missRanger.Rmd)
Error: processing vignette ‘missRanger.Rmd’ failed with diagnostics:
DLL requires the use of native symbols
--- failed re-building ‘missRanger.Rmd’
--- re-building ‘multiple_imputation.Rmd’ using rmarkdown
Quitting from lines 34-53 (multiple_imputation.Rmd)
Error: processing vignette ‘multiple_imputation.Rmd’ failed with diagnostics:
DLL requires the use of native symbols
--- failed re-building ‘multiple_imputation.Rmd’
SUMMARY: processing the following files failed:
‘censored_variables.Rmd’ ‘missRanger.Rmd’ ‘multiple_imputation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(missRanger)
>
> test_check("missRanger")
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 46 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-missRanger.R:6:3'): all missings are filled ────────────────────
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:6:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-missRanger.R:44:3'): pmm.k works regarding value range in double columns ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:44:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-missRanger.R:52:3'): pmm.k works regarding value range in integer columns ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:52:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-missRanger.R:76:3'): formula interface works with unspecified left side ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. └─missRanger::missRanger(...) at test-missRanger.R:76:2
2. └─missRanger::pmm(...)
3. └─FNN::knnx.index(xtrain, xtest, k)
4. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:4:3'): pmm picks the right reference based on numeric values ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:4:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:12:3'): pmm picks the right reference based on logical values ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:12:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:19:3'): pmm picks the right reference based on character values ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:19:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:26:3'): pmm picks the right reference based on a factor ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:26:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(...)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
── Error ('test-pmm.R:35:3'): pmm picks the right reference based on date vector ──
Error in `get.knnx(data, query, k, algorithm)`: DLL requires the use of native symbols
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-pmm.R:35:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─missRanger::pmm(xtrain, xquery, ytrain = 1:2)
5. └─FNN::knnx.index(xtrain, xtest, k)
6. └─FNN::get.knnx(data, query, k, algorithm)
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 46 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc