Last updated on 2024-09-14 20:48:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.11 | 18.19 | 671.21 | 689.40 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.11 | 12.42 | 406.47 | 418.89 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.11 | 1001.24 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.11 | 1104.09 | OK | |||
| r-devel-windows-x86_64 | 1.0.11 | 19.00 | 650.00 | 669.00 | OK | |
| r-patched-linux-x86_64 | 1.0.11 | 16.80 | 632.34 | 649.14 | OK | |
| r-release-linux-x86_64 | 1.0.11 | 16.63 | 623.92 | 640.55 | ERROR | |
| r-release-macos-arm64 | 1.0.11 | 299.00 | OK | |||
| r-release-macos-x86_64 | 1.0.11 | 479.00 | OK | |||
| r-release-windows-x86_64 | 1.0.11 | 18.00 | 636.00 | 654.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.11 | 260.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.11 | 456.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.11 | 25.00 | 916.00 | 941.00 | OK |
Version: 1.0.11
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘epiR’
Flavor: r-release-linux-x86_64
Version: 1.0.11
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [374s/438s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(metaumbrella)
>
> test_check("metaumbrella")
Analyzing factor: A
Analyzing factor: A
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Physically_active
Analyzing factor: Physically_active
Analyzing factor: Physically_active
The pre/post correlation was calculated using values indicated in studies: Ray (2014) / Livingston (2010) / Israel (2014) / Sosa (2018) / Haulman (2015) / Esquibel (2007) / Ledoux (1982) / Bell (1989) / Canchola (2008) / Gonzalez (2003) / Boucneau (2000)
Analyzing factor: gestational_diabetes
Analyzing factor: gestational_diabetes
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: SSRI
Analyzing factor: SSRI
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Gestational_hypertension
Analyzing factor: Gestational_hypertension
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Surgical
Analyzing factor: ADHD
Analyzing factor: ASD
Analyzing factor: dyslexia
Analyzing factor: ID
Analyzing factor: Yoga
Analyzing factor: Aerobic training
Analyzing factor: Resistance training
Analyzing factor: Mindfulness
Analyzing factor: Smoking
Analyzing factor: SSRI
Analyzing factor: Yoga
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: A
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Weisel 2020
In factor 'Weisel 2020':
- study: 'Enock (2014)' contains multiple outcomes
- study: 'Pham (2016)' contains multiple outcomes
In factor 'Weisel 2020' some studies have multiple outcomes but they are not associated with any within-study correlation (which can be indicated in the 'r' column of the dataset). A value of r = 0.5 is assumed.
[ FAIL 1 | WARN 0 | SKIP 59 | PASS 612 ]
══ Skipped tests (59) ══════════════════════════════════════════════════════════
• On CRAN (59): 'test-esb_test.R:10:5', 'test-esb_test.R:77:5',
'test-esb_test.R:138:5', 'test-esb_test.R:181:5', 'test-esb_test.R:234:5',
'test-esb_test.R:247:5', 'test-esb_test.R:299:5', 'test-esb_test.R:354:5',
'test-estimate_n_from_es.R:10:3', 'test-estimate_n_from_es.R:47:3',
'test-estimate_n_from_es.R:94:3', 'test-estimate_n_from_es.R:135:3',
'test-format_dataset.R:12:3', 'test-format_dataset.R:30:3',
'test-format_dataset.R:53:3', 'test-format_dataset.R:75:3',
'test-format_dataset.R:101:3', 'test-format_dataset.R:142:3',
'test-format_dataset.R:176:3', 'test-format_dataset.R:214:3',
'test-format_dataset.R:254:3', 'test-format_dataset.R:305:3',
'test-functions_multilevel.R:5:3', 'test-functions_multilevel.R:51:3',
'test-functions_multilevel.R:86:3', 'test-functions_multilevel.R:119:3',
'test-functions_multilevel.R:164:3', 'test-umbrella.R:8:3',
'test-umbrella.R:15:3', 'test-umbrella.R:47:3', 'test-umbrella.R:61:3',
'test-umbrella.R:82:3', 'test-umbrella.R:96:3', 'test-umbrella.R:124:3',
'test-umbrella.R:153:3', 'test-umbrella.R:172:3', 'test-umbrella.R:191:3',
'test-umbrella.R:415:3', 'test-umbrella.R:428:3', 'test-umbrella.R:446:3',
'test-umbrella.R:461:3', 'test-umbrella.R:477:3', 'test-umbrella.R:491:3',
'test-umbrella.R:510:3', 'test-umbrella.R:529:3', 'test-umbrella.R:547:3',
'test-umbrella.R:572:3', 'test-umbrella.R:589:3', 'test-umbrella.R:604:3',
'test-umbrella.R:624:3', 'test-umbrella.R:641:3', 'test-umbrella.R:658:3',
'test-umbrella.R:675:3', 'test-umbrella.R:692:3', 'test-umbrella.R:709:3',
'test-umbrella.R:726:3', 'test-umbrella.R:746:3', 'test-umbrella.R:791:3',
'test-umbrella.R:836:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions_power.R:53:5'): power for OR is correctly estimated ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'epiR'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-functions_power.R:53:5
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 1 | WARN 0 | SKIP 59 | PASS 612 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64