Last updated on 2025-07-29 21:51:50 CEST.
| Package | ERROR | OK |
|---|---|---|
| airqualityES | 13 | |
| geneHummus | 13 | |
| refseqR | 1 | 12 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.5
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: refseq_CDScoords
> ### Title: Extract the coding sequences (CDS) coordinates from a transcript
> ### accession
> ### Aliases: refseq_CDScoords
>
> ### ** Examples
>
> transcript = c("XM_004487701")
> refseq_CDScoords(transcript)
Error in refseq_CDScoords(transcript) :
Exactly one CDS per file is expected. Contact the maintainer
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘refseqR.Rmd’ using rmarkdown
Quitting from refseqR.Rmd:109-111 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `refseq_CDScoords()`:
! Exactly one CDS per file is expected. Contact the maintainer
---
Backtrace:
▆
1. ├─base::substr(toString(refseq_CDSseq(transcript)), 1, 60)
2. ├─base::toString(refseq_CDSseq(transcript))
3. └─refseqR::refseq_CDSseq(transcript)
4. └─refseqR::refseq_CDScoords(transcript)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
Exactly one CDS per file is expected. Contact the maintainer
--- failed re-building ‘refseqR.Rmd’
SUMMARY: processing the following file failed:
‘refseqR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64