Last updated on 2026-04-24 20:51:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.5.0 | 19.05 | 397.22 | 416.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.5.0 | 11.98 | 261.16 | 273.14 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.5.0 | 32.00 | 599.03 | 631.03 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.5.0 | 34.00 | 657.68 | 691.68 | OK | |
| r-patched-linux-x86_64 | 2.5.0 | 20.42 | 368.81 | 389.23 | OK | |
| r-release-linux-x86_64 | 2.5.0 | 16.58 | 360.54 | 377.12 | OK | |
| r-release-macos-arm64 | 2.5.0 | 4.00 | 77.00 | 81.00 | OK | |
| r-release-macos-x86_64 | 2.5.0 | 12.00 | 217.00 | 229.00 | ERROR | |
| r-release-windows-x86_64 | 2.5.0 | 22.00 | 366.00 | 388.00 | OK | |
| r-oldrel-macos-arm64 | 2.5.0 | 4.00 | 68.00 | 72.00 | OK | |
| r-oldrel-macos-x86_64 | 2.5.0 | 13.00 | 234.00 | 247.00 | OK | |
| r-oldrel-windows-x86_64 | 2.5.0 | 21.00 | 350.00 | 371.00 | OK |
Version: 2.5.0
Check: examples
Result: ERROR
Running examples in ‘gtsummary-Ex.R’ failed
The error most likely occurred in:
> ### Name: bold_p
> ### Title: Bold significant p-values
> ### Aliases: bold_p
>
> ### ** Examples
>
> # Example 1 ----------------------------------
> trial |>
+ tbl_summary(by = trt, include = c(response, marker, trt), missing = "no") |>
+ add_p() |>
+ bold_p(t = 0.1)
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<table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead>
<tr class="gt_col_headings">
<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="label"><span class='gt_from_md'><strong>Characteristic</strong></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_1"><span class='gt_from_md'><strong>Drug A</strong><br />
N = 98</span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_2"><span class='gt_from_md'><strong>Drug B</strong><br />
N = 102</span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="p.value"><span class='gt_from_md'><strong>p-value</strong></span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>2</sup></span></th>
</tr>
</thead>
<tbody class="gt_table_body">
<tr><td headers="label" class="gt_row gt_left">Tumor Response</td>
<td headers="stat_1" class="gt_row gt_center">28 (29%)</td>
<td headers="stat_2" class="gt_row gt_center">33 (34%)</td>
<td headers="p.value" class="gt_row gt_center">0.5</td></tr>
<tr><td headers="label" class="gt_row gt_left">Marker Level (ng/mL)</td>
<td headers="stat_1" class="gt_row gt_center">0.84 (0.23, 1.60)</td>
<td headers="stat_2" class="gt_row gt_center">0.52 (0.18, 1.21)</td>
<td headers="p.value" class="gt_row gt_center" style="font-weight: bold;">0.085</td></tr>
</tbody>
<tfoot>
<tr class="gt_footnotes">
<td class="gt_footnote" colspan="4"><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span> <span class='gt_from_md'>n (%); Median (Q1, Q3)</span></td>
</tr>
<tr class="gt_footnotes">
<td class="gt_footnote" colspan="4"><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>2</sup></span> <span class='gt_from_md'>Pearson’s Chi-squared test; Wilcoxon rank sum test</span></td>
</tr>
</tfoot>
</table>
</div>
>
> # Example 2 ----------------------------------
> glm(response ~ trt + grade, trial, family = binomial(link = "logit")) |>
+ tbl_regression(exponentiate = TRUE) |>
+ bold_p(t = 0.65)
Error in bold_p(tbl_regression(glm(response ~ trt + grade, trial, family = binomial(link = "logit")), :
The package "broom.helpers" (>= 1.20.0) is required.
Calls: bold_p ... tbl_regression -> check_pkg_installed -> <Anonymous>
Execution halted
Flavor: r-release-macos-x86_64
Version: 2.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘gtsummary_definition.Rmd’ using rmarkdown
Quitting from gtsummary_definition.Rmd:30-41 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `bold_p()`:
! The package "broom.helpers" (>= 1.20.0) is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gtsummary_definition.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.20.0) is required.
--- failed re-building ‘gtsummary_definition.Rmd’
SUMMARY: processing the following file failed:
‘gtsummary_definition.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64