Last updated on 2025-04-12 20:51:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.0 | 17.94 | 360.38 | 378.32 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.0 | 10.24 | 99.35 | 109.59 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.0 | 262.45 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.0 | 144.61 | ERROR | |||
| r-devel-macos-arm64 | 2.1.0 | 156.00 | OK | |||
| r-devel-macos-x86_64 | 2.1.0 | 419.00 | OK | |||
| r-devel-windows-x86_64 | 2.1.0 | 18.00 | 336.00 | 354.00 | OK | |
| r-patched-linux-x86_64 | 2.1.0 | 20.31 | 346.44 | 366.75 | OK | |
| r-release-linux-x86_64 | 2.1.0 | OK | ||||
| r-release-macos-arm64 | 2.1.0 | 141.00 | OK | |||
| r-release-macos-x86_64 | 2.1.0 | 283.00 | OK | |||
| r-release-windows-x86_64 | 2.1.0 | 26.00 | 464.00 | 490.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.0 | 156.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.0 | 352.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.1.0 | 25.00 | 451.00 | 476.00 | OK |
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘gtsummary-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_nevent.tbl_survfit
> ### Title: Add event N
> ### Aliases: add_nevent.tbl_survfit
>
> ### ** Examples
>
> ## Don't show:
> if (gtsummary:::is_pkg_installed(c("survival", "broom"))) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ library(survival)
+ fit1 <- survfit(Surv(ttdeath, death) ~ 1, trial)
+ fit2 <- survfit(Surv(ttdeath, death) ~ trt, trial)
+
+ # Example 1 ----------------------------------
+ list(fit1, fit2) |>
+ tbl_survfit(times = c(12, 24)) |>
+ add_n() |>
+ add_nevent()
+ ## Don't show:
+ }) # examplesIf
> library(survival)
> fit1 <- survfit(Surv(ttdeath, death) ~ 1, trial)
> fit2 <- survfit(Surv(ttdeath, death) ~ trt, trial)
> add_nevent(add_n(tbl_survfit(list(fit1, fit2), times = c(12, 24))))
Error in `dplyr::mutate()`:
ℹ In argument: `gts_column = case_switch(...)`.
Caused by error:
! `gts_column` must be size 12 or 1, not 10.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─gtsummary::add_nevent(...)
7. │ └─gtsummary:::check_class(x, "gtsummary")
8. ├─gtsummary::add_n(...)
9. │ └─gtsummary:::check_class(x, "gtsummary")
10. ├─gtsummary::tbl_survfit(list(fit1, fit2), times = c(12, 24))
11. ├─gtsummary:::tbl_survfit.list(...)
12. │ └─base::lapply(...)
13. │ └─gtsummary (local) FUN(X[[i]], ...)
14. │ ├─dplyr::mutate(...)
15. │ └─dplyr:::mutate.data.frame(...)
16. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
17. │ ├─base::withCallingHandlers(...)
18. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
19. │ └─mask$eval_all_mutate(quo)
20. │ └─dplyr (local) eval()
21. ├─dplyr:::dplyr_internal_error(...)
22. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
23. │ └─rlang:::signal_abort(cnd, .file)
24. │ └─base::signalCondition(cnd)
25. └─dplyr (local) `<fn>`(`<dpl:::__>`)
26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [19s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(gtsummary)
Attaching package: 'gtsummary'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtsummary", stop_on_warning = TRUE)
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 95 | PASS 41 ]
══ Skipped tests (95) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test-add_ci.tbl_summary.R:1:1',
'test-add_ci.tbl_svysummary.R:1:1', 'test-add_difference.tbl_summary.R:1:1',
'test-add_difference.tbl_svysummary.R:1:1', 'test-add_glance.R:1:1',
'test-add_global_p.tbl_regression.R:1:1',
'test-add_global_p.tbl_uvregression.R:1:1',
'test-add_n.tbl_regression.R:1:1', 'test-add_n.tbl_summary.R:1:1',
'test-add_n.tbl_survfit.R:1:1', 'test-add_n.tbl_svysummary.R:1:1',
'test-add_n.tbl_uvregression.R:1:1', 'test-add_nevent.tbl_regression.R:1:1',
'test-add_nevent.tbl_survfit.R:1:1',
'test-add_nevent.tbl_uvregression.R:1:1',
'test-add_overall.tbl_ard_summary.R:1:1',
'test-add_overall.tbl_continuous.R:1:1',
'test-add_overall.tbl_custom_summary.R:1:1',
'test-add_overall.tbl_hierarchical.R:1:1',
'test-add_overall.tbl_summary.R:1:1',
'test-add_overall.tbl_svysummary.R:1:1', 'test-add_p.tbl_continuous.R:1:1',
'test-add_p.tbl_cross.R:1:1', 'test-add_p.tbl_summary.R:1:1',
'test-add_p.tbl_survfit.R:1:1', 'test-add_p.tbl_svysummary.R:1:1',
'test-add_q.R:1:1', 'test-add_significance_stars.R:1:1',
'test-add_stat.R:1:1', 'test-add_stat_label.R:1:1',
'test-add_stat_label.tbl_ard_summary.R:1:1',
'test-add_stat_label.tbl_svysummary.R:1:1', 'test-add_vif.R:1:1',
'test-as_flex_table.R:1:1', 'test-as_gt.R:1:1', 'test-as_hux_table.R:1:1',
'test-as_kable.R:1:1', 'test-as_kable_extra.R:1:1', 'test-as_tibble.R:1:1',
'test-bold_italicize_labels_levels.R:1:1', 'test-bold_p.R:1:1',
'test-combine_terms.R:1:1', 'test-custom_tidiers.R:1:1',
'test-gather_ard.R:1:1', 'test-inline_text.R:1:1', 'test-label_style.R:1:1',
'test-modify_abbreviation.R:1:1', 'test-modify_caption.R:1:1',
'test-modify_column_alignment.R:1:1', 'test-modify_column_hide.R:1:1',
'test-modify_column_indent.R:1:1', 'test-modify_column_merge.R:1:1',
'test-modify_fmt_fun.R:1:1', 'test-modify_footnote.R:1:1',
'test-modify_footnote_body.R:1:1', 'test-modify_footnote_header.R:1:1',
'test-modify_footnote_spanning_header.R:1:1', 'test-modify_header.R:1:1',
'test-modify_source_note.R:1:1', 'test-modify_spanning_header.R:1:1',
'test-modify_table_body.R:1:1', 'test-modify_table_styling.R:1:1',
'test-plot.tbl_regression.R:1:1', 'test-plot.tbl_uvregression.R:1:1',
'test-remove_row_type.R:1:1', 'test-scoping_gtsummary.R:1:1',
'test-select_helpers.R:1:1', 'test-separate_p_footnotes.R:1:1',
'test-show_header_names.R:1:1', 'test-sort_filter_p.R:1:1',
'test-style_pvalue.R:49:3', 'test-tbl_ard_continuous.R:1:1',
'test-tbl_ard_hierarchical.R:1:1', 'test-tbl_ard_summary.R:1:1',
'test-tbl_ard_wide_summary.R:1:1', 'test-tbl_butcher.R:1:1',
'test-tbl_continuous.R:1:1', 'test-tbl_cross.R:1:1',
'test-tbl_custom_summary.R:1:1', 'test-tbl_hierarchical.R:1:1',
'test-tbl_likert.R:1:1', 'test-tbl_merge.R:1:1', 'test-tbl_regression.R:1:1',
'test-tbl_regression_methods.R:1:1', 'test-tbl_split.R:1:1',
'test-tbl_stack.R:1:1', 'test-tbl_strata.R:1:1', 'test-tbl_summary.R:1:1',
'test-tbl_survfit.R:1:1', 'test-tbl_svysummary.R:1:1',
'test-tbl_uvregression.R:1:1', 'test-tbl_wide_summary.R:1:1',
'test-theme_elements_gtsummary.R:1:1', 'test-theme_gtsummary.R:1:1',
'test-tbl_strata_nested_stack.R:110:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tbl_strata_nested_stack.R:2:3'): tbl_strata_nested_stack() works ──
<check_class/standalone-checks/rlang_error/error/condition>
Error in `tbl_strata_nested_stack(trial, strata = trt, ~modify_header(tbl_summary(.x,
include = c(age, grade), missing = "no"), all_stat_cols() ~
"**Summary Statistics**"))`: The `x` argument must be class <card>, not a tibble.
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-tbl_strata_nested_stack.R:2:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─gtsummary::tbl_strata_nested_stack(...)
10. ├─rlang::set_names(...)
11. └─gtsummary:::map(...)
12. └─base::lapply(.x, .f, ...)
13. └─gtsummary (local) FUN(X[[i]], ...)
14. ├─dplyr::select(...)
15. └─cards::rename_ard_columns(...)
16. └─cards:::check_class(x, "card")
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
── Error ('test-tbl_strata_nested_stack.R:83:3'): tbl_strata_nested_stack() works with unobserved factor levels ──
<check_class/standalone-checks/rlang_error/error/condition>
Error in `tbl_strata_nested_stack(dplyr::mutate(trial, trt = factor(trt,
levels = c("Drug A", "Drug B", "Drug C"))), strata = trt,
~modify_header(tbl_summary(.x, include = c(age, grade), missing = "no"),
all_stat_cols() ~ "**Summary Statistics**"))`: The `x` argument must be class <card>, not a tibble.
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-tbl_strata_nested_stack.R:83:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─gtsummary::tbl_strata_nested_stack(...)
10. ├─rlang::set_names(...)
11. └─gtsummary:::map(...)
12. └─base::lapply(.x, .f, ...)
13. └─gtsummary (local) FUN(X[[i]], ...)
14. ├─dplyr::select(...)
15. └─cards::rename_ard_columns(...)
16. └─cards:::check_class(x, "card")
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 95 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘gtsummary-Ex.R’ failed
The error most likely occurred in:
> ### Name: add_nevent.tbl_survfit
> ### Title: Add event N
> ### Aliases: add_nevent.tbl_survfit
>
> ### ** Examples
>
> ## Don't show:
> if (gtsummary:::is_pkg_installed(c("survival", "broom"))) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ library(survival)
+ fit1 <- survfit(Surv(ttdeath, death) ~ 1, trial)
+ fit2 <- survfit(Surv(ttdeath, death) ~ trt, trial)
+
+ # Example 1 ----------------------------------
+ list(fit1, fit2) |>
+ tbl_survfit(times = c(12, 24)) |>
+ add_n() |>
+ add_nevent()
+ ## Don't show:
+ }) # examplesIf
> library(survival)
> fit1 <- survfit(Surv(ttdeath, death) ~ 1, trial)
> fit2 <- survfit(Surv(ttdeath, death) ~ trt, trial)
> add_nevent(add_n(tbl_survfit(list(fit1, fit2), times = c(12, 24))))
Error in `dplyr::mutate()`:
ℹ In argument: `gts_column = case_switch(...)`.
Caused by error:
! `gts_column` must be size 12 or 1, not 10.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─gtsummary::add_nevent(...)
7. │ └─gtsummary:::check_class(x, "gtsummary")
8. ├─gtsummary::add_n(...)
9. │ └─gtsummary:::check_class(x, "gtsummary")
10. ├─gtsummary::tbl_survfit(list(fit1, fit2), times = c(12, 24))
11. ├─gtsummary:::tbl_survfit.list(...)
12. │ └─base::lapply(...)
13. │ └─gtsummary (local) FUN(X[[i]], ...)
14. │ ├─dplyr::mutate(...)
15. │ └─dplyr:::mutate.data.frame(...)
16. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
17. │ ├─base::withCallingHandlers(...)
18. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
19. │ └─mask$eval_all_mutate(quo)
20. │ └─dplyr (local) eval()
21. ├─dplyr:::dplyr_internal_error(...)
22. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
23. │ └─rlang:::signal_abort(cnd, .file)
24. │ └─base::signalCondition(cnd)
25. └─dplyr (local) `<fn>`(`<dpl:::__>`)
26. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [44s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(gtsummary)
Attaching package: 'gtsummary'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtsummary", stop_on_warning = TRUE)
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 95 | PASS 41 ]
══ Skipped tests (95) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test-add_ci.tbl_summary.R:1:1',
'test-add_difference.tbl_summary.R:1:1', 'test-add_ci.tbl_svysummary.R:1:1',
'test-add_difference.tbl_svysummary.R:1:1', 'test-add_glance.R:1:1',
'test-add_global_p.tbl_regression.R:1:1',
'test-add_global_p.tbl_uvregression.R:1:1',
'test-add_n.tbl_regression.R:1:1', 'test-add_n.tbl_summary.R:1:1',
'test-add_n.tbl_survfit.R:1:1', 'test-add_n.tbl_svysummary.R:1:1',
'test-add_nevent.tbl_regression.R:1:1', 'test-add_n.tbl_uvregression.R:1:1',
'test-add_nevent.tbl_survfit.R:1:1',
'test-add_nevent.tbl_uvregression.R:1:1',
'test-add_overall.tbl_ard_summary.R:1:1',
'test-add_overall.tbl_continuous.R:1:1',
'test-add_overall.tbl_custom_summary.R:1:1',
'test-add_overall.tbl_hierarchical.R:1:1',
'test-add_overall.tbl_svysummary.R:1:1',
'test-add_overall.tbl_summary.R:1:1', 'test-add_p.tbl_continuous.R:1:1',
'test-add_p.tbl_cross.R:1:1', 'test-add_p.tbl_survfit.R:1:1',
'test-add_p.tbl_summary.R:1:1', 'test-add_p.tbl_svysummary.R:1:1',
'test-add_q.R:1:1', 'test-add_significance_stars.R:1:1',
'test-add_stat.R:1:1', 'test-add_stat_label.R:1:1',
'test-add_stat_label.tbl_ard_summary.R:1:1',
'test-add_stat_label.tbl_svysummary.R:1:1', 'test-add_vif.R:1:1',
'test-as_flex_table.R:1:1', 'test-as_gt.R:1:1', 'test-as_hux_table.R:1:1',
'test-as_kable.R:1:1', 'test-as_kable_extra.R:1:1', 'test-as_tibble.R:1:1',
'test-bold_italicize_labels_levels.R:1:1', 'test-bold_p.R:1:1',
'test-combine_terms.R:1:1', 'test-custom_tidiers.R:1:1',
'test-gather_ard.R:1:1', 'test-inline_text.R:1:1', 'test-label_style.R:1:1',
'test-modify_abbreviation.R:1:1', 'test-modify_caption.R:1:1',
'test-modify_column_alignment.R:1:1', 'test-modify_column_hide.R:1:1',
'test-modify_column_indent.R:1:1', 'test-modify_column_merge.R:1:1',
'test-modify_fmt_fun.R:1:1', 'test-modify_footnote.R:1:1',
'test-modify_footnote_body.R:1:1',
'test-modify_footnote_spanning_header.R:1:1',
'test-modify_footnote_header.R:1:1', 'test-modify_header.R:1:1',
'test-modify_source_note.R:1:1', 'test-modify_spanning_header.R:1:1',
'test-modify_table_body.R:1:1', 'test-modify_table_styling.R:1:1',
'test-plot.tbl_regression.R:1:1', 'test-plot.tbl_uvregression.R:1:1',
'test-remove_row_type.R:1:1', 'test-scoping_gtsummary.R:1:1',
'test-select_helpers.R:1:1', 'test-separate_p_footnotes.R:1:1',
'test-show_header_names.R:1:1', 'test-sort_filter_p.R:1:1',
'test-style_pvalue.R:49:3', 'test-tbl_ard_continuous.R:1:1',
'test-tbl_ard_hierarchical.R:1:1', 'test-tbl_ard_summary.R:1:1',
'test-tbl_ard_wide_summary.R:1:1', 'test-tbl_butcher.R:1:1',
'test-tbl_continuous.R:1:1', 'test-tbl_cross.R:1:1',
'test-tbl_custom_summary.R:1:1', 'test-tbl_likert.R:1:1',
'test-tbl_hierarchical.R:1:1', 'test-tbl_merge.R:1:1',
'test-tbl_regression.R:1:1', 'test-tbl_split.R:1:1',
'test-tbl_regression_methods.R:1:1', 'test-tbl_stack.R:1:1',
'test-tbl_strata.R:1:1', 'test-tbl_summary.R:1:1', 'test-tbl_survfit.R:1:1',
'test-tbl_svysummary.R:1:1', 'test-tbl_uvregression.R:1:1',
'test-tbl_wide_summary.R:1:1', 'test-theme_elements_gtsummary.R:1:1',
'test-theme_gtsummary.R:1:1', 'test-tbl_strata_nested_stack.R:110:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tbl_strata_nested_stack.R:2:3'): tbl_strata_nested_stack() works ──
<check_class/standalone-checks/rlang_error/error/condition>
Error in `tbl_strata_nested_stack(trial, strata = trt, ~modify_header(tbl_summary(.x,
include = c(age, grade), missing = "no"), all_stat_cols() ~
"**Summary Statistics**"))`: The `x` argument must be class <card>, not a tibble.
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-tbl_strata_nested_stack.R:2:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─gtsummary::tbl_strata_nested_stack(...)
10. ├─rlang::set_names(...)
11. └─gtsummary:::map(...)
12. └─base::lapply(.x, .f, ...)
13. └─gtsummary (local) FUN(X[[i]], ...)
14. ├─dplyr::select(...)
15. └─cards::rename_ard_columns(...)
16. └─cards:::check_class(x, "card")
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
── Error ('test-tbl_strata_nested_stack.R:83:3'): tbl_strata_nested_stack() works with unobserved factor levels ──
<check_class/standalone-checks/rlang_error/error/condition>
Error in `tbl_strata_nested_stack(dplyr::mutate(trial, trt = factor(trt,
levels = c("Drug A", "Drug B", "Drug C"))), strata = trt,
~modify_header(tbl_summary(.x, include = c(age, grade), missing = "no"),
all_stat_cols() ~ "**Summary Statistics**"))`: The `x` argument must be class <card>, not a tibble.
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-tbl_strata_nested_stack.R:83:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─gtsummary::tbl_strata_nested_stack(...)
10. ├─rlang::set_names(...)
11. └─gtsummary:::map(...)
12. └─base::lapply(.x, .f, ...)
13. └─gtsummary (local) FUN(X[[i]], ...)
14. ├─dplyr::select(...)
15. └─cards::rename_ard_columns(...)
16. └─cards:::check_class(x, "card")
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 95 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [24s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(gtsummary)
Attaching package: 'gtsummary'
The following object is masked from 'package:testthat':
matches
>
> test_check("gtsummary", stop_on_warning = TRUE)
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 95 | PASS 41 ]
══ Skipped tests (95) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test-add_ci.tbl_summary.R:1:1',
'test-add_ci.tbl_svysummary.R:1:1', 'test-add_difference.tbl_summary.R:1:1',
'test-add_difference.tbl_svysummary.R:1:1', 'test-add_glance.R:1:1',
'test-add_global_p.tbl_regression.R:1:1',
'test-add_global_p.tbl_uvregression.R:1:1',
'test-add_n.tbl_regression.R:1:1', 'test-add_n.tbl_summary.R:1:1',
'test-add_n.tbl_survfit.R:1:1', 'test-add_n.tbl_svysummary.R:1:1',
'test-add_n.tbl_uvregression.R:1:1', 'test-add_nevent.tbl_regression.R:1:1',
'test-add_nevent.tbl_survfit.R:1:1',
'test-add_nevent.tbl_uvregression.R:1:1',
'test-add_overall.tbl_ard_summary.R:1:1',
'test-add_overall.tbl_continuous.R:1:1',
'test-add_overall.tbl_custom_summary.R:1:1',
'test-add_overall.tbl_hierarchical.R:1:1',
'test-add_overall.tbl_summary.R:1:1',
'test-add_overall.tbl_svysummary.R:1:1', 'test-add_p.tbl_continuous.R:1:1',
'test-add_p.tbl_cross.R:1:1', 'test-add_p.tbl_summary.R:1:1',
'test-add_p.tbl_survfit.R:1:1', 'test-add_p.tbl_svysummary.R:1:1',
'test-add_q.R:1:1', 'test-add_significance_stars.R:1:1',
'test-add_stat.R:1:1', 'test-add_stat_label.R:1:1',
'test-add_stat_label.tbl_ard_summary.R:1:1',
'test-add_stat_label.tbl_svysummary.R:1:1', 'test-add_vif.R:1:1',
'test-as_flex_table.R:1:1', 'test-as_gt.R:1:1', 'test-as_hux_table.R:1:1',
'test-as_kable.R:1:1', 'test-as_kable_extra.R:1:1', 'test-as_tibble.R:1:1',
'test-bold_italicize_labels_levels.R:1:1', 'test-bold_p.R:1:1',
'test-combine_terms.R:1:1', 'test-custom_tidiers.R:1:1',
'test-gather_ard.R:1:1', 'test-inline_text.R:1:1', 'test-label_style.R:1:1',
'test-modify_abbreviation.R:1:1', 'test-modify_caption.R:1:1',
'test-modify_column_alignment.R:1:1', 'test-modify_column_hide.R:1:1',
'test-modify_column_indent.R:1:1', 'test-modify_column_merge.R:1:1',
'test-modify_fmt_fun.R:1:1', 'test-modify_footnote.R:1:1',
'test-modify_footnote_body.R:1:1', 'test-modify_footnote_header.R:1:1',
'test-modify_footnote_spanning_header.R:1:1', 'test-modify_header.R:1:1',
'test-modify_source_note.R:1:1', 'test-modify_spanning_header.R:1:1',
'test-modify_table_body.R:1:1', 'test-modify_table_styling.R:1:1',
'test-plot.tbl_regression.R:1:1', 'test-plot.tbl_uvregression.R:1:1',
'test-remove_row_type.R:1:1', 'test-scoping_gtsummary.R:1:1',
'test-select_helpers.R:1:1', 'test-separate_p_footnotes.R:1:1',
'test-show_header_names.R:1:1', 'test-sort_filter_p.R:1:1',
'test-style_pvalue.R:49:3', 'test-tbl_ard_continuous.R:1:1',
'test-tbl_ard_hierarchical.R:1:1', 'test-tbl_ard_summary.R:1:1',
'test-tbl_ard_wide_summary.R:1:1', 'test-tbl_butcher.R:1:1',
'test-tbl_continuous.R:1:1', 'test-tbl_cross.R:1:1',
'test-tbl_custom_summary.R:1:1', 'test-tbl_hierarchical.R:1:1',
'test-tbl_likert.R:1:1', 'test-tbl_merge.R:1:1', 'test-tbl_regression.R:1:1',
'test-tbl_regression_methods.R:1:1', 'test-tbl_split.R:1:1',
'test-tbl_stack.R:1:1', 'test-tbl_strata.R:1:1', 'test-tbl_summary.R:1:1',
'test-tbl_survfit.R:1:1', 'test-tbl_svysummary.R:1:1',
'test-tbl_uvregression.R:1:1', 'test-tbl_wide_summary.R:1:1',
'test-theme_elements_gtsummary.R:1:1', 'test-theme_gtsummary.R:1:1',
'test-tbl_strata_nested_stack.R:110:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tbl_strata_nested_stack.R:2:3'): tbl_strata_nested_stack() works ──
<check_class/standalone-checks/rlang_error/error/condition>
Error in `tbl_strata_nested_stack(trial, strata = trt, ~modify_header(tbl_summary(.x,
include = c(age, grade), missing = "no"), all_stat_cols() ~
"**Summary Statistics**"))`: The `x` argument must be class <card>, not a tibble.
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-tbl_strata_nested_stack.R:2:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─gtsummary::tbl_strata_nested_stack(...)
10. ├─rlang::set_names(...)
11. └─gtsummary:::map(...)
12. └─base::lapply(.x, .f, ...)
13. └─gtsummary (local) FUN(X[[i]], ...)
14. ├─dplyr::select(...)
15. └─cards::rename_ard_columns(...)
16. └─cards:::check_class(x, "card")
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
── Error ('test-tbl_strata_nested_stack.R:83:3'): tbl_strata_nested_stack() works with unobserved factor levels ──
<check_class/standalone-checks/rlang_error/error/condition>
Error in `tbl_strata_nested_stack(dplyr::mutate(trial, trt = factor(trt,
levels = c("Drug A", "Drug B", "Drug C"))), strata = trt,
~modify_header(tbl_summary(.x, include = c(age, grade), missing = "no"),
all_stat_cols() ~ "**Summary Statistics**"))`: The `x` argument must be class <card>, not a tibble.
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-tbl_strata_nested_stack.R:83:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─gtsummary::tbl_strata_nested_stack(...)
10. ├─rlang::set_names(...)
11. └─gtsummary:::map(...)
12. └─base::lapply(.x, .f, ...)
13. └─gtsummary (local) FUN(X[[i]], ...)
14. ├─dplyr::select(...)
15. └─cards::rename_ard_columns(...)
16. └─cards:::check_class(x, "card")
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 95 | PASS 41 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc