CRAN Package Check Results for Maintainer ‘Folu Akintola <folu.akintola at ndorms.ox.ac.uk>’

Last updated on 2026-04-29 21:49:11 CEST.

Package	ERROR	OK
OmopStudyBuilder	2	5

Package OmopStudyBuilder

Current CRAN status: ERROR: 2, OK: 5

Version: 0.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [43s/528s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(OmopStudyBuilder) > > test_check("OmopStudyBuilder") Saving _problems/test-linkGitHub-203.R [6/27] <08><08><08><08><08><08><08>[7/27] <08><08><08><08><08><08><08>[8/27] <08><08><08><08><08><08><08>[9/27] <08><08><08><08><08><08><08>[10/27] <08><08><08><08><08><08><08><08>[11/27] <08><08><08><08><08><08><08><08>[12/27] <08><08><08><08><08><08><08><08>[13/27] <08><08><08><08><08><08><08><08>[14/27] <08><08><08><08><08><08><08><08>[15/27] <08><08><08><08><08><08><08><08>[16/27] <08><08><08><08><08><08><08><08>[17/27] <08><08><08><08><08><08><08><08>[18/27] <08><08><08><08><08><08><08><08>[19/27] <08><08><08><08><08><08><08><08>[20/27] <08><08><08><08><08><08><08><08>[21/27] <08><08><08><08><08><08><08><08>[22/27] <08><08><08><08><08><08><08><08>[23/27] <08><08><08><08><08><08><08><08>[24/27] <08><08><08><08><08><08><08><08>[25/27] <08><08><08><08><08><08><08><08>[26/27] <08><08><08><08><08><08><08><08>[27/27] The following package(s) were not installed successfully: - [httr]: install failed - [CodelistGenerator]: install failed - [CDMConnector]: dependency failed (httr) - [CohortCharacteristics]: dependency failed (CDMConnector) - [CohortConstructor]: dependency failed (CodelistGenerator) - [DrugUtilisation]: dependency failed (CodelistGenerator) - [IncidencePrevalence]: dependency failed (CDMConnector) - [MeasurementDiagnostics]: dependency failed (CohortCharacteristics, CohortConstructor) - [OmopSketch]: dependency failed (CohortConstructor) - [PhenotypeR]: dependency failed (CodelistGenerator, CohortCharacteristics, CohortConstructor, DrugUtilisation, IncidencePrevalence, MeasurementDiagnostics, OmopSketch) You may need to manually download and install these packages. The following package(s) were not installed successfully: - [httr]: install failed - [CodelistGenerator]: install failed - [CDMConnector]: dependency failed (httr) - [CohortCharacteristics]: dependency failed (CDMConnector) - [CohortConstructor]: dependency failed (CodelistGenerator) - [DrugUtilisation]: dependency failed (CodelistGenerator) - [IncidencePrevalence]: dependency failed (CDMConnector) - [MeasurementDiagnostics]: dependency failed (CohortCharacteristics, CohortConstructor) - [OmopSketch]: dependency failed (CohortConstructor) - [PhenotypeR]: dependency failed (CodelistGenerator, CohortCharacteristics, CohortConstructor, DrugUtilisation, IncidencePrevalence, MeasurementDiagnostics, OmopSketch) You may need to manually download and install these packages. [ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ] ══ Skipped tests (15) ══════════════════════════════════════════════════════════ • Integration test - requires built image (1): 'test-dockerWrapper.R:99:3' • Integration test - requires built image and config file (1): 'test-dockerWrapper.R:107:3' • Integration test - requires built image and test script (3): 'test-dockerWrapper.R:103:3', 'test-dockerWrapper.R:111:3', 'test-dockerWrapper.R:115:3' • Integration test - requires built rstudio image (4): 'test-dockerWrapper.R:65:3', 'test-dockerWrapper.R:69:3', 'test-dockerWrapper.R:73:3', 'test-dockerWrapper.R:77:3' • Integration test - requires running container (2): 'test-dockerWrapper.R:85:3', 'test-dockerWrapper.R:89:3' • Integration test - requires valid renv project (2): 'test-dockerWrapper.R:53:3', 'test-dockerWrapper.R:57:3' • Manual test - set RUN_MANUAL_TESTS=true to run (requires GITHUB_PAT) (2): 'test-linkGitHub.R:308:3', 'test-linkGitHub.R:342:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-linkGitHub.R:200:3'): ensureGitIdentity errors when git identity is missing and user info is absent ── Expected `OmopStudyBuilder:::ensureGitIdentity(temp_dir, NULL)` to throw a error. [ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [44s/56s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(OmopStudyBuilder) > > test_check("OmopStudyBuilder") Saving _problems/test-linkGitHub-203.R [22/62] <08><08><08><08><08><08><08><08>[23/62] <08><08><08><08><08><08><08><08>[24/62] <08><08><08><08><08><08><08><08>[25/62] <08><08><08><08><08><08><08><08>[26/62] <08><08><08><08><08><08><08><08>[27/62] <08><08><08><08><08><08><08><08>[28/62] <08><08><08><08><08><08><08><08>[29/62] <08><08><08><08><08><08><08><08>[30/62] <08><08><08><08><08><08><08><08>[31/62] <08><08><08><08><08><08><08><08>[32/62] <08><08><08><08><08><08><08><08>[33/62] <08><08><08><08><08><08><08><08>[34/62] <08><08><08><08><08><08><08><08>[35/62] <08><08><08><08><08><08><08><08>[36/62] <08><08><08><08><08><08><08><08>[37/62] <08><08><08><08><08><08><08><08>[38/62] <08><08><08><08><08><08><08><08>[39/62] <08><08><08><08><08><08><08><08>[40/62] <08><08><08><08><08><08><08><08>[41/62] <08><08><08><08><08><08><08><08>[42/62] <08><08><08><08><08><08><08><08>[43/62] <08><08><08><08><08><08><08><08>[44/62] <08><08><08><08><08><08><08><08>[45/62] <08><08><08><08><08><08><08><08>[46/62] <08><08><08><08><08><08><08><08>[47/62] <08><08><08><08><08><08><08><08>[48/62] <08><08><08><08><08><08><08><08>[49/62] <08><08><08><08><08><08><08><08>[50/62] <08><08><08><08><08><08><08><08>[51/62] <08><08><08><08><08><08><08><08>[52/62] <08><08><08><08><08><08><08><08>[53/62] <08><08><08><08><08><08><08><08>[54/62] <08><08><08><08><08><08><08><08>[55/62] <08><08><08><08><08><08><08><08>[56/62] <08><08><08><08><08><08><08><08>[57/62] <08><08><08><08><08><08><08><08>[58/62] <08><08><08><08><08><08><08><08>[59/62] <08><08><08><08><08><08><08><08>[60/62] <08><08><08><08><08><08><08><08>[61/62] <08><08><08><08><08><08><08><08>[62/62] [ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ] ══ Skipped tests (15) ══════════════════════════════════════════════════════════ • Integration test - requires built image (1): 'test-dockerWrapper.R:99:3' • Integration test - requires built image and config file (1): 'test-dockerWrapper.R:107:3' • Integration test - requires built image and test script (3): 'test-dockerWrapper.R:103:3', 'test-dockerWrapper.R:111:3', 'test-dockerWrapper.R:115:3' • Integration test - requires built rstudio image (4): 'test-dockerWrapper.R:65:3', 'test-dockerWrapper.R:69:3', 'test-dockerWrapper.R:73:3', 'test-dockerWrapper.R:77:3' • Integration test - requires running container (2): 'test-dockerWrapper.R:85:3', 'test-dockerWrapper.R:89:3' • Integration test - requires valid renv project (2): 'test-dockerWrapper.R:53:3', 'test-dockerWrapper.R:57:3' • Manual test - set RUN_MANUAL_TESTS=true to run (requires GITHUB_PAT) (2): 'test-linkGitHub.R:308:3', 'test-linkGitHub.R:342:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-linkGitHub.R:200:3'): ensureGitIdentity errors when git identity is missing and user info is absent ── Expected `OmopStudyBuilder:::ensureGitIdentity(temp_dir, NULL)` to throw a error. [ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc