CRAN Package Check Results for Maintainer Florian Privé <florian.prive.21 at gmail.com>

CRAN Package Check Results for Maintainer ‘Florian Privé <florian.prive.21 at gmail.com>’

Last updated on 2026-04-29 21:49:11 CEST.

Package	ERROR	NOTE	OK
bigassertr			13
bigparallelr			13
bigreadr			13
bigsnpr	1	1	11
bigsparser		1	12
bigstatsr		1	12
bigutilsr			13
inplace			13
mmapcharr		1	12
pcadapt		1	12
primefactr		2	11
rmio			13
runonce			13

Package bigsnpr

Current CRAN status: ERROR: 1, NOTE: 1, OK: 11

Version: 1.12.21
Check: compiled code
Result: NOTE File ‘bigsnpr/libs/bigsnpr.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavor: r-release-macos-x86_64

Version: 1.12.21
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [176s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(bigsnpr) Loading required package: bigstatsr > > for (k in 1:9) + test_check("bigsnpr", filter = paste0(k, '-')) [ FAIL 0 | WARN 0 | SKIP 1 | PASS 268 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • is_cran is TRUE (1): 'test-1-readBed.R:53:3' [ FAIL 0 | WARN 0 | SKIP 1 | PASS 268 ] [ FAIL 0 | WARN 0 | SKIP 3 | PASS 219 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • is_cran is TRUE (3): 'test-2-autoSVD.R:28:3', 'test-2-autoSVD.R:76:3', 'test-2-bed-clumping-SVD.R:7:1' [ FAIL 0 | WARN 0 | SKIP 3 | PASS 219 ] [ FAIL 0 | WARN 0 | SKIP 2 | PASS 11 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • is_cran is TRUE (2): 'test-3-fastImpute.R:12:3', 'test-3-plink-QC.R:6:1' [ FAIL 0 | WARN 0 | SKIP 2 | PASS 11 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 95 ] Saving _problems/test-5-match-96.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 135 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-5-match.R:95:3'): snp_asGeneticPos() works ───────────────────── Error in `serverSocket(port = port)`: creation of server socket failed: port 11169 cannot be opened Backtrace: ▆ 1. └─bigsnpr::snp_asGeneticPos(...) at test-5-match.R:95:3 2. └─bigsnpr::snp_split(...) 3. └─bigparallelr::register_parallel(ncores) 4. └─parallel::makeCluster(ncores, ...) 5. └─parallel::makePSOCKcluster(names = spec, ...) 6. └─base::serverSocket(port = port) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 135 ] Error: ! Test failures. Execution halted Flavor: r-release-windows-x86_64

Package bigsparser

Current CRAN status: NOTE: 1, OK: 12

Version: 0.7.3
Check: compiled code
Result: NOTE File ‘bigsparser/libs/bigsparser.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavor: r-release-macos-x86_64

Package bigstatsr

Current CRAN status: NOTE: 1, OK: 12

Version: 1.6.2
Check: compiled code
Result: NOTE File ‘bigstatsr/libs/bigstatsr.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavor: r-release-macos-x86_64

Package bigutilsr

Current CRAN status: OK: 13

Package inplace

Current CRAN status: OK: 13

Package mmapcharr

Current CRAN status: NOTE: 1, OK: 12

Version: 0.3.1
Check: compiled code
Result: NOTE File ‘mmapcharr/libs/mmapcharr.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavor: r-release-macos-x86_64

Package pcadapt

Current CRAN status: NOTE: 1, OK: 12

Version: 4.4.1
Check: compiled code
Result: NOTE File ‘pcadapt/libs/pcadapt.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavor: r-release-macos-x86_64

Package primefactr

Current CRAN status: NOTE: 2, OK: 11

Version: 0.1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Florian Privé <florian.prive.21@gmail.com>’ Found the following (possibly) invalid file URIs: URI: commits/master From: README.md URI: /commits/master From: README.md Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package rmio

Current CRAN status: OK: 13

Package runonce

Current CRAN status: OK: 13