Last updated on 2026-06-07 21:51:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.14.0.0 | 91.96 | 147.50 | 239.46 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.14.0.0 | 80.29 | 91.08 | 171.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.14.0.0 | 125.00 | 241.26 | 366.26 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.14.0.0 | 216.00 | 250.64 | 466.64 | OK | |
| r-devel-windows-x86_64 | 0.14.0.0 | 101.00 | 231.00 | 332.00 | OK | |
| r-patched-linux-x86_64 | 0.14.0.0 | 107.13 | 143.24 | 250.37 | OK | |
| r-release-linux-x86_64 | 0.14.0.0 | 110.70 | 141.45 | 252.15 | OK | |
| r-release-macos-arm64 | 0.14.0.0 | 24.00 | 16.00 | 40.00 | OK | |
| r-release-macos-x86_64 | 0.14.0.0 | 77.00 | 93.00 | 170.00 | OK | |
| r-release-windows-x86_64 | 0.14.0.0 | 114.00 | 207.00 | 321.00 | OK | |
| r-oldrel-macos-arm64 | 0.14.0.0 | 24.00 | 19.00 | 43.00 | OK | |
| r-oldrel-macos-x86_64 | 0.14.0.0 | 82.00 | 124.00 | 206.00 | OK | |
| r-oldrel-windows-x86_64 | 0.14.0.0 | 120.00 | 270.00 | 390.00 | OK |
Version: 0.14.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘advanced-modeling.qmd’ using html
Warning in file(open = "w+b") :
cannot open file '/tmp/RtmpTpmfM9/Rf78c382b0017e6': No space left on device
Error: processing vignette 'advanced-modeling.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `file()`:
! cannot open the connection
--- failed re-building ‘advanced-modeling.qmd’
--- re-building ‘getting-started.qmd’ using html
<1b>[31m
processing file: getting-started.qmd
<1b>[39m<1b>[31mError in `plot.epiworld_diagram()`:
! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects. Please install it using install.packages('DiagrammeR').
Backtrace:
▆
1. ├─base::plot(diagram)
2. └─epiworldR:::plot.epiworld_diagram(diagram)
<1b>[39m<1b>[31m
Quitting from getting-started.qmd:107-110 [mermaid-diagram]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[39m<1b>[31m~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.epiworld_diagram()`:
! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects. Please install it using install.packages('DiagrammeR').
---
Backtrace:
▆
1. ├─base::plot(diagram)
2. └─epiworldR:::plot.epiworld_diagram(diagram)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
<1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Error: processing vignette 'getting-started.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: getting-started.qmd
<1b>[31mError in `plot.epiworld_diagram()`:<1b>[39m
! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects.
Please install it using install.packages('DiagrammeR').
Backtrace:
▆
1. ├─base::plot(diagram)
2. └─epiworldR:::plot.epiworld_diagram(diagram)
Quitting from getting-started.qmd:107-110 [mermaid-diagram]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<1b>[31m~~~~~~~~~~~~~~~~~~~<1b>[39m
<error/rlang_error>
Error in `plot.epiworld_diagram()`:
! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects.
Please install it using install.packages('DiagrammeR').
---
Backtrace:
▆
1. ├─base::plot(diagram)
2. └─epiworldR:::plot.epiworld_diagram(diagram)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘getting-started.qmd’
--- re-building ‘implementation.qmd’ using html
<1b>[1mpandoc <1b>[22m
to: html
output-file: implementation.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
<1b>[1mmetadata<1b>[22m
document-css: false
lang: en
engines:
- path: /opt/quarto/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
minimal: true
theme: none
title: Implementation details of epiworldR
author:
- George Vega Yon
- Derek Meyer
date: '2023-06-20'
vignette: |
%\VignetteIndexEntry{Implementation details of epiworldR} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
[WARNING] Could not convert TeX math
P(i\to j| \mbox{at most one}) = \frac{p_{ij} \times \prod_{k\neq i}\left(1 - p_{kj}\right)}{\prod_k\left(1 - p_{kj}\right) + \sum_k p_{kj} \times \prod_{l\neq k}\left(1 - p_{lj}\right)}
, rendering as TeX
Output created: implementation.html
--- finished re-building ‘implementation.qmd’
--- re-building ‘likelihood-free-mcmc.qmd’ using html
<1b>[31m
processing file: likelihood-free-mcmc.qmd
<1b>[39m<1b>[31moutput file: likelihood-free-mcmc.knit.md
<1b>[39m<1b>[1mpandoc <1b>[22m
to: html
output-file: likelihood-free-mcmc.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
<1b>[1mmetadata<1b>[22m
document-css: false
lang: en
engines:
- path: /opt/quarto/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
minimal: true
theme: none
title: Likelihood Free Markhov Chain Monte Carlo (LFMCMC)
author:
- Andrew Pulsipher
date: '`r Sys.Date()`'
vignette: |
%\VignetteIndexEntry{Likelihood Free Markhov Chain Monte Carlo (LFMCMC)} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
Output created: likelihood-free-mcmc.html
--- finished re-building ‘likelihood-free-mcmc.qmd’
--- re-building ‘mixing.qmd’ using html
<1b>[31m
processing file: mixing.qmd
<1b>[39m<1b>[31moutput file: mixing.knit.md
<1b>[39m<1b>[1mpandoc <1b>[22m
to: html
output-file: mixing.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
<1b>[1mmetadata<1b>[22m
document-css: false
lang: en
engines:
- path: /opt/quarto/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
minimal: true
theme: none
title: Mixing models
author:
- George Vega Yon
date: '`r Sys.Date()`'
vignette: |
%\VignetteIndexEntry{Mixing models} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
[WARNING] Could not convert TeX math
\left[%
\begin{array}{ccc}
0.9 & 0.05 & 0.05 \\
0.1 & 0.8 & 0.1 \\
0.1 & 0.2 & 0.7 \\
\end{array}%
\right]
, rendering as TeX
Output created: mixing.html
--- finished re-building ‘mixing.qmd’
--- re-building ‘run-multiple.qmd’ using html
<1b>[31m
processing file: run-multiple.qmd
<1b>[39m<1b>[31moutput file: run-multiple.knit.md
<1b>[39m<1b>[91mERROR: No space left on device (os error 28): tmpfile
Stack trace:
at makeTempFileSync (ext:deno_fs/30_fs.js:176:10)
at file:///opt/quarto/bin/quarto.js:98536:29
at withAttempts (file:///opt/quarto/bin/quarto.js:98495:14)
at Object.makeTempFileSync (file:///opt/quarto/bin/quarto.js:98536:10)
at Object.createFile (file:///opt/quarto/bin/quarto.js:26225:19)
at handleCombinedLuaProfiles (file:///opt/quarto/bin/quarto.js:129006:20)
at runPandoc (file:///opt/quarto/bin/quarto.js:129540:5)
at eventLoopTick (ext:core/01_core.js:179:7)
at async renderPandoc (file:///opt/quarto/bin/quarto.js:130920:24)
at async Object.onRender (file:///opt/quarto/bin/quarto.js:136863:30)
at async renderFileInternal (file:///opt/quarto/bin/quarto.js:136840:9)
at async renderFiles (file:///opt/quarto/bin/quarto.js:136571:9)
at async render (file:///opt/quarto/bin/quarto.js:142225:19)
at async _Command.actionHandler (file:///opt/quarto/bin/quarto.js:142470:24)
at async _Command.execute (file:///opt/quarto/bin/quarto.js:102091:7)
at async _Command.parseCommand (file:///opt/quarto/bin/quarto.js:101968:14)
at async quarto4 (file:///opt/quarto/bin/quarto.js:187649:5)
at async file:///opt/quarto/bin/quarto.js:187677:5
at async file:///opt/quarto/bin/quarto.js:187532:14
at async mainRunner (file:///opt/quarto/bin/quarto.js:187534:5)
at async file:///opt/quarto/bin/quarto.js:187670:3<1b>[39m
Error: processing vignette 'run-multiple.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: run-multiple.qmd
<1b>[31moutput file: run-multiple.knit.md<1b>[39m
<1b>[91mERROR: No space left on device (os error 28): tmpfile<1b>[39m
Stack trace:
at makeTempFileSync (ext:deno_fs/30_fs.js:176:10)
at file:///opt/quarto/bin/quarto.js:98536:29
at withAttempts (file:///opt/quarto/bin/quarto.js:98495:14)
at Object.makeTempFileSync (file:///opt/quarto/bin/quarto.js:98536:10)
at Object.createFile (file:///opt/quarto/bin/quarto.js:26225:19)
at handleCombinedLuaProfiles (file:///opt/quarto/bin/quarto.js:129006:20)
at runPandoc (file:///opt/quarto/bin/quarto.js:129540:5)
at eventLoopTick (ext:core/01_core.js:179:7)
at async renderPandoc (file:///opt/quarto/bin/quarto.js:130920:24)
at async Object.onRender (file:///opt/quarto/bin/quarto.js:136863:30)
at async renderFileInternal (file:///opt/quarto/bin/quarto.js:136840:9)
at async renderFiles (file:///opt/quarto/bin/quarto.js:136571:9)
at async render (file:///opt/quarto/bin/quarto.js:142225:19)
at async _Command.actionHandler (file:///opt/quarto/bin/quarto.js:142470:24)
at async _Command.execute (file:///opt/quarto/bin/quarto.js:102091:7)
at async _Command.parseCommand (file:///opt/quarto/bin/quarto.js:101968:14)
at async quarto4 (file:///opt/quarto/bin/quarto.js:187649:5)
at async file:///opt/quarto/bin/quarto.js:187677:5
at async file:///opt/quarto/bin/quarto.js:187532:14
at async mainRunner (file:///opt/quarto/bin/quarto.js:187534:5)
at async file:///opt/quarto/bin/quarto.js:187670:3
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘run-multiple.qmd’
SUMMARY: processing the following files failed:
‘advanced-modeling.qmd’ ‘getting-started.qmd’ ‘run-multiple.qmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.14.0.0
Check: PDF version of manual
Result: ERROR
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
cannot open file '/tmp/Rtmp5n8cQK/ltx824bf793c984c/agents_smallworld.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Flavor: r-devel-linux-x86_64-debian-gcc