Last updated on 2026-02-26 20:51:15 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.12 | 3.02 | 36.46 | 39.48 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.12 | 2.04 | 26.22 | 28.26 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.12 | 53.36 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.12 | 51.45 | OK | |||
| r-devel-macos-arm64 | 2.1.12 | 1.00 | 35.00 | 36.00 | OK | |
| r-devel-windows-x86_64 | 2.1.12 | 6.00 | 61.00 | 67.00 | OK | |
| r-patched-linux-x86_64 | 2.1.12 | 3.09 | 33.30 | 36.39 | OK | |
| r-release-linux-x86_64 | 2.1.12 | 2.99 | 32.78 | 35.77 | OK | |
| r-release-macos-arm64 | 2.1.12 | OK | ||||
| r-release-macos-x86_64 | 2.1.12 | 2.00 | 57.00 | 59.00 | OK | |
| r-release-windows-x86_64 | 2.1.12 | 6.00 | 60.00 | 66.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.12 | OK | ||||
| r-oldrel-macos-x86_64 | 2.1.12 | 2.00 | 63.00 | 65.00 | OK | |
| r-oldrel-windows-x86_64 | 2.1.12 | 6.00 | 71.00 | 77.00 | OK |
Version: 2.1.12
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cthist)
>
> test_check("cthist")
Unable to connect to clinicaltrials.gov
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_criteria-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_lead_sponsor-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_orgstudyid-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_overall_contacts-12.R
Version caused a warning: NCT00098137 version 0
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00098137/history/0': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_pcdate_none-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_pcdate_precision-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_pcdate_type-12.R
Unable to connect to clinicaltrials.gov
Saving _problems/test-clinicaltrials_gov_version_results_posted-14.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '421 Unknown Error'
Saving _problems/test-clinicaltrials_gov_version_sex-12.R
NCT02586649 - 4 of 4
2026-02-26 15:40:54.089428 NCT02586649 processed (4 versions, 100%)
Rows: 1 Columns: 29
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (20): nctid, overall_status, study_start_date_precision, primary_comple...
dbl (3): version_number, total_versions, enrolment
lgl (3): accepts_healthy_volunteers, whystopped, results_posted
date (3): version_date, study_start_date, primary_completion_date
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Unable to connect to clinicaltrials.gov
Version caused a warning: NCT04338971 version 2
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT04338971/history/2': HTTP status was '421 Unknown Error'
Saving _problems/test-overall_status_lengths-4.R
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 21 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-clinicaltrials_gov_version_criteria.R:9:9'): ClinicalTrials.gov criteria downloads correctly ──
Error in `version$criteria`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$criteria, "<p>Inclusion Criteria (MCI patients):</p><ul><li>right handedness</li><li><p>amnestic and amnestic plus MCI with:</p><ol><li>subjective memory impairment;</li><li>objective memory difficulties, at least 1 SD below gender, age and education adjusted standard values;</li><li>relatively normal performance in other cognitive domains;</li><li>no constraints in activities of daily livings</li><li>age: 50-90 years</li></ol></li></ul><p>Exclusion Criteria:</p><ul><li>severe internal or psychiatric disease</li><li>epilepsy</li><li>other severe neurological diseases, e.g.\nprevious major stroke or brain tumor</li><li>DMS-IV manifest dementia</li><li>contraindication for MRT (claustrophobia, metallic implants, tattoos)</li></ul>") at test-clinicaltrials_gov_version_criteria.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_lead_sponsor.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$lead_sponsor`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_lead_sponsor.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$lead_sponsor)
── Error ('test-clinicaltrials_gov_version_orgstudyid.R:9:9'): ClinicalTrials.gov org study ID downloads correctly ──
Error in `version$orgstudyid`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$orgstudyid, "LOCATO-MCI-tDCS") at test-clinicaltrials_gov_version_orgstudyid.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_overall_contacts.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$overall_contacts`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_overall_contacts.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$overall_contacts)
── Error ('test-clinicaltrials_gov_version_pcdate_none.R:9:9'): ClinicalTrials.gov empty primary completion date ──
Error in `version$pcdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(is.na(version$pcdate), TRUE) at test-clinicaltrials_gov_version_pcdate_none.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_precision.R:9:9'): ClinicalTrials.gov primary completion date precision downloads correctly ──
Error in `version$pcdate_precision`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate_precision, "month") at test-clinicaltrials_gov_version_pcdate_precision.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_type.R:9:9'): ClinicalTrials.gov primary completion date type downloads correctly ──
Error in `version$pcdate_type`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate_type, "ESTIMATED") at test-clinicaltrials_gov_version_pcdate_type.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_results_posted.R:10:9'): ClinicalTrials.gov results posted downloads correctly ──
Error in `version_true$results_posted`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(...) at test-clinicaltrials_gov_version_results_posted.R:10:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_sex.R:9:9'): ClinicalTrials.gov sex downloads correctly ──
Error in `version$sex`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$sex, "ALL") at test-clinicaltrials_gov_version_sex.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-overall_status_lengths.R:2:3'): Overall status lengths parse correctly ──
Error in `versiondata$ostatus`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─cthist::clinicaltrials_gov_download("NCT04338971", quiet = TRUE) at test-overall_status_lengths.R:2:3
2. │ ├─... %>% ...
3. │ └─tibble::tribble(...)
4. │ └─tibble:::extract_frame_data_from_dots(...)
5. │ └─rlang::list2(...)
6. └─readr::write_csv(., file = output_filename, append = TRUE)
7. └─readr::write_delim(...)
8. ├─base::stopifnot(is.data.frame(x))
9. └─base::is.data.frame(x)
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 21 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc