Last updated on 2025-04-12 20:51:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 13.52 | 153.19 | 166.71 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.5 | 9.73 | 105.07 | 114.80 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.5 | 292.14 | OK | |||
| r-devel-macos-arm64 | 1.0.5 | 124.00 | OK | |||
| r-devel-macos-x86_64 | 1.0.5 | 205.00 | OK | |||
| r-devel-windows-x86_64 | 1.0.5 | 19.00 | 169.00 | 188.00 | OK | |
| r-patched-linux-x86_64 | 1.0.5 | 12.41 | 155.33 | 167.74 | OK | |
| r-release-linux-x86_64 | 1.0.5 | OK | ||||
| r-release-macos-arm64 | 1.0.5 | 122.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0.5 | 164.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0.5 | 22.00 | 234.00 | 256.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.5 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.0.5 | 210.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.5 | 23.00 | 228.00 | 251.00 | NOTE |
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [47s/69s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x55ff9e3674d0>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [61s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x0000015fd98fc5a0>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64