Last updated on 2026-04-29 21:49:09 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| speaq | 1 | 12 |
Current CRAN status: ERROR: 1, NOTE: 12
Version: 2.7.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Charlie Beirnaert <charlie_beirnaert@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Charlie",
family = "Beirnaert",
role = c("aut", "cre"),
email = "charlie_beirnaert@icloud.com"),
person(given = c("Trung", "Nghia"),
family = "Vu",
role = "aut"),
person(given = "Pieter",
family = "Meysman",
role = "aut"),
person(given = "Kris",
family = "Laukens",
role = "aut"),
person(given = "Dirk",
family = "Valkenborg",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.7.0
Check: Rd files
Result: NOTE
checkRd: (-1) findRef.Rd:39: Lost braces
39 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
| ^
checkRd: (-1) hClustAlign.Rd:70: Lost braces
70 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘classic_speaq_vignette.Rmd’ using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Unaligned_spectral_plots'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Peak_detection'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Reference_finding'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Spectral_alignment'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Spectral_alignment_optimal_maxShift'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Spectral_segment_alignment'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'AlignedSpectral_plots'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'AlignedSpectral_plots_limited_height'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Aligned_spectral_plots_customized'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'Quantitative_analysis'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'drawBW_1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'drawBW_2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
--- finished re-building ‘classic_speaq_vignette.Rmd’
--- re-building ‘speaq2_illustrations.Rmd’ using rmarkdown
Quitting from speaq2_illustrations.Rmd:70-83 [detect winepeaks]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `serverSocket()`:
! creation of server socket failed: port 11678 cannot be opened
---
Backtrace:
▆
1. └─speaq::getWaveletPeaks(...)
2. └─parallel::makeCluster(nCPU)
3. └─parallel::makePSOCKcluster(names = spec, ...)
4. └─base::serverSocket(port = port)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'speaq2_illustrations.Rmd' failed with diagnostics:
creation of server socket failed: port 11678 cannot be opened
--- failed re-building ‘speaq2_illustrations.Rmd’
SUMMARY: processing the following file failed:
‘speaq2_illustrations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc