Last updated on 2025-08-22 21:48:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-3 | 6.11 | 59.42 | 65.53 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1-3 | 5.24 | 46.73 | 51.97 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1-3 | 103.68 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-3 | 102.30 | OK | |||
| r-devel-windows-x86_64 | 1.1-3 | 8.00 | 83.00 | 91.00 | OK | |
| r-patched-linux-x86_64 | 1.1-3 | 7.49 | 56.80 | 64.29 | OK | |
| r-release-linux-x86_64 | 1.1-3 | 6.78 | 57.11 | 63.89 | OK | |
| r-release-macos-arm64 | 1.1-3 | 43.00 | OK | |||
| r-release-macos-x86_64 | 1.1-3 | 66.00 | OK | |||
| r-release-windows-x86_64 | 1.1-3 | 8.00 | 84.00 | 92.00 | OK | |
| r-oldrel-macos-arm64 | 1.1-3 | 43.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1-3 | 74.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1-3 | 10.00 | 108.00 | 118.00 | OK |
Version: 1.1-3
Check: examples
Result: ERROR
Running examples in ‘betaper-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cca_pertables
> ### Title: Function to assess the efects of taxonomic uncertainty on
> ### [Partial] Constrained Correspondence Analysis
> ### Aliases: cca_pertables plot.cca_pertables print.cca_pertables
> ### Keywords: multivariate
>
> ### ** Examples
>
>
>
> data(Amazonia)
> data(soils)
>
> # Define a new index that includes the terms used in the \code{Amazonia} dataset to define
> # undetermined taxa at different taxonomic levels
>
> index.Amazon <- c(paste("sp.", rep(1:20), sep=""), "Indet.", "indet.")
>
> # Generate a pertables object (i.e. a list of biological data tables simulated from taxonomic
> # uncertainty)
> ## Not run:
> ##D
> ##D Amazonia100 <- pertables(Amazonia, index=index.Amazon, nsim=100)
> ##D
> ##D # Assess the effects of taxonomic uncertainty on a CCA analysis of biological data explained
> ##D # by all the environmental variables of the soil data:
> ##D
> ##D Amazonia.cca <- cca_pertables(Amazonia100 ~., data=soils)
> ##D
> ##D Amazonia.cca
> ##D
> ##D plot(Amazonia.cca)
> ## End(Not run)
> # Fast example for Rcheck
>
> Amazonia4.p2 <- pertables.p2(Amazonia[1:50,], index=index.Amazon, nsim=4, ncl=2, iseed=4)
Error in serverSocket(port = port) :
creation of server socket failed: port 11949 cannot be opened
Calls: pertables.p2 -> makeCluster -> makePSOCKcluster -> serverSocket
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang