Last updated on 2026-06-07 21:51:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.2.3 | 48.36 | 295.03 | 343.39 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.2.3 | 33.58 | 185.74 | 219.32 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.2.3 | 89.00 | 476.97 | 565.97 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.2.3 | 91.00 | 454.35 | 545.35 | OK | |
| r-devel-windows-x86_64 | 3.2.3 | 58.00 | 319.00 | 377.00 | OK | |
| r-patched-linux-x86_64 | 3.2.3 | 56.44 | 278.37 | 334.81 | OK | |
| r-release-linux-x86_64 | 3.2.3 | 44.54 | 278.76 | 323.30 | OK | |
| r-release-macos-arm64 | 3.2.3 | 11.00 | 55.00 | 66.00 | OK | |
| r-release-macos-x86_64 | 3.2.3 | 35.00 | 298.00 | 333.00 | OK | |
| r-release-windows-x86_64 | 3.2.3 | 60.00 | 304.00 | 364.00 | ERROR | |
| r-oldrel-macos-arm64 | 3.2.3 | OK | ||||
| r-oldrel-macos-x86_64 | 3.2.3 | 32.00 | 238.00 | 270.00 | OK | |
| r-oldrel-windows-x86_64 | 3.2.3 | 82.00 | 376.00 | 458.00 | OK |
Version: 3.2.3
Check: tests
Result: ERROR
Running '001.setupExampleData,annotationData.R' [11s]
Running '002.setupExampleData,rawData.R' [3s]
Running 'AffymetrixCdfFile.R' [3s]
Running 'AffymetrixCelFile.R' [1s]
Running 'AffymetrixCelSet.R' [3s]
Running the tests in 'tests/002.setupExampleData,rawData.R' failed.
Complete output:
> library("aroma.affymetrix")
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.27.1 (2025-05-02 21:00:05 UTC) successfully loaded. See ?R.oo for help.
Attaching package: 'R.oo'
The following object is masked from 'package:R.methodsS3':
throw
The following objects are masked from 'package:methods':
getClasses, getMethods
The following objects are masked from 'package:base':
attach, detach, load, save
R.utils v2.13.0 (2025-02-24 21:20:02 UTC) successfully loaded. See ?R.utils for help.
Attaching package: 'R.utils'
The following object is masked from 'package:utils':
timestamp
The following objects are masked from 'package:base':
cat, commandArgs, getOption, isOpen, nullfile, parse, use, warnings
Loading required package: aroma.core
Loading required package: R.filesets
R.filesets v2.15.1 (2024-01-24 17:22:49 UTC) successfully loaded. See ?R.filesets for help.
Attaching package: 'R.filesets'
The following object is masked from 'package:R.utils':
validate
The following objects are masked from 'package:base':
append, readLines
Loading required package: R.devices
R.devices v2.17.4 (2026-05-09 14:42:11 UTC) successfully loaded. See ?R.devices for help.
aroma.core v3.3.2 (2025-08-18 23:10:02 UTC) successfully loaded. See ?aroma.core for help.
Attaching package: 'aroma.core'
The following objects are masked from 'package:base':
.Machine, colMeans, colSums, library, require, write
Loading required package: aroma.light
aroma.light v3.41.0 (2025-10-29 13:58:18 UTC) successfully loaded. See ?aroma.light for help.
Attaching package: 'aroma.light'
The following objects are masked from 'package:aroma.affymetrix':
averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
plotXYCurve
The following objects are masked from 'package:aroma.core':
callNaiveGenotypes, normalizeTumorBoost
Loading required package: affxparser
Attaching package: 'affxparser'
The following object is masked from 'package:aroma.affymetrix':
writeCdf
The following object is masked from 'package:R.utils':
findFiles
The following object is masked _by_ package:aroma.affymetrix:
writeCdf
The following object is masked from package:R.utils:
findFiles
aroma.affymetrix v3.2.3 (2025-08-19 07:00:02 UTC) successfully loaded. See ?aroma.affymetrix for help.
Attaching package: 'aroma.affymetrix'
The following objects are masked _by_ 'package:aroma.light':
averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
plotXYCurve
The following object is masked from 'package:affxparser':
writeCdf
>
> setupExampleData(aroma.affymetrix, dirs="rawData", mustWork=FALSE)
Ihre Berechtigungen reichen nicht aus, um diesen Vorgang auszuführen.
Der Befehl "cscript" ist entweder falsch geschrieben oder
konnte nicht gefunden werden.
[2026-06-06 10:16:27.842451] Exception: Failed to create file link (methods attempted: 'unix-symlink', 'windows-ntfs-symlink', 'windows-shortcut'; current working directory: 'd:/Rcompile/CRANpkg/local/4.6/aroma.affymetrix.Rcheck/tests'): 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL'[.lnk] -> 'D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL'
Warnings and errors captured: unix-symlink produced simpleWarning: 'cannot symlink 'D:\RCompile\CRANpkg\lib\4.6\AffymetrixDataTestFiles\rawData\FusionSDK_HG-Focus\HG-Focus\2.Calvin\HG-Focus-1-121502.CEL' to 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL', reason 'Dem Client fehlt ein erforderliches Recht''; windows-ntfs-symlink produced Exception: 'Shell command 'mklink "rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL"' had status 1 (using shell 'C:\Windows\system32\cmd.exe'): '; windows-shortcut produced Exception: 'An error occurred when calling VBScript ('cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpcXW3V9\file2453b86f502d80.vbs"') to create Windows Shortcut link 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL.LNK'. The reason was: Shell command 'cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpcXW3V9\file2453b86f502d80.vbs"' had status 1 (using shell 'C:\Windows\system32\cmd.exe'): '
at #04. createLink.default(link = pathnameD, target = pathnameS, skip = TRUE)
- createLink.default() is in environment 'R.utils'
at #03. createLink(link = pathnameD, target = pathnameS, skip = TRUE)
- createLink() is in environment 'R.utils'
at #02. setupExampleData.AromaAffymetrix(aroma.affymetrix, dirs = "rawData",
mustWork = FALSE)
- setupExampleData.AromaAffymetrix() is in environment 'aroma.affymetrix'
at #01. setupExampleData(aroma.affymetrix, dirs = "rawData", mustWork = FALSE)
- setupExampleData() is in environment 'aroma.affymetrix'
Error: Failed to create file link (methods attempted: 'unix-symlink', 'windows-ntfs-symlink', 'windows-shortcut'; current working directory: 'd:/Rcompile/CRANpkg/local/4.6/aroma.affymetrix.Rcheck/tests'): 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL'[.lnk] -> 'D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL'
Warnings and errors captured: unix-symlink produced simpleWarning: 'cannot symlink 'D:\RCompile\CRANpkg\lib\4.6\AffymetrixDataTestFiles\rawData\FusionSDK_HG-Focus\HG-Focus\2.Calvin\HG-Focus-1-121502.CEL' to 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL', reason 'Dem Client fehlt ein erforderliches Recht''; windows-ntfs-symlink produced Exception: 'Shell command 'mklink "rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL"' had status 1 (using shell 'C:\Windows\
In addition: Warning messages:
1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
running command 'C:\Windows\system32\cmd.exe /c mklink "rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL"' had status 1
2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
running command 'C:\Windows\system32\cmd.exe /c cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpcXW3V9\file2453b86f502d80.vbs"' had status 1
Execution halted
Running the tests in 'tests/AffymetrixCdfFile.R' failed.
Complete output:
> library("aroma.affymetrix")
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.27.1 (2025-05-02 21:00:05 UTC) successfully loaded. See ?R.oo for help.
Attaching package: 'R.oo'
The following object is masked from 'package:R.methodsS3':
throw
The following objects are masked from 'package:methods':
getClasses, getMethods
The following objects are masked from 'package:base':
attach, detach, load, save
R.utils v2.13.0 (2025-02-24 21:20:02 UTC) successfully loaded. See ?R.utils for help.
Attaching package: 'R.utils'
The following object is masked from 'package:utils':
timestamp
The following objects are masked from 'package:base':
cat, commandArgs, getOption, isOpen, nullfile, parse, use, warnings
Loading required package: aroma.core
Loading required package: R.filesets
R.filesets v2.15.1 (2024-01-24 17:22:49 UTC) successfully loaded. See ?R.filesets for help.
Attaching package: 'R.filesets'
The following object is masked from 'package:R.utils':
validate
The following objects are masked from 'package:base':
append, readLines
Loading required package: R.devices
R.devices v2.17.4 (2026-05-09 14:42:11 UTC) successfully loaded. See ?R.devices for help.
aroma.core v3.3.2 (2025-08-18 23:10:02 UTC) successfully loaded. See ?aroma.core for help.
Attaching package: 'aroma.core'
The following objects are masked from 'package:base':
.Machine, colMeans, colSums, library, require, write
Loading required package: aroma.light
aroma.light v3.41.0 (2025-10-29 13:58:18 UTC) successfully loaded. See ?aroma.light for help.
Attaching package: 'aroma.light'
The following objects are masked from 'package:aroma.affymetrix':
averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
plotXYCurve
The following objects are masked from 'package:aroma.core':
callNaiveGenotypes, normalizeTumorBoost
Loading required package: affxparser
Attaching package: 'affxparser'
The following object is masked from 'package:aroma.affymetrix':
writeCdf
The following object is masked from 'package:R.utils':
findFiles
The following object is masked _by_ package:aroma.affymetrix:
writeCdf
The following object is masked from package:R.utils:
findFiles
aroma.affymetrix v3.2.3 (2025-08-19 07:00:02 UTC) successfully loaded. See ?aroma.affymetrix for help.
Attaching package: 'aroma.affymetrix'
The following objects are masked _by_ 'package:aroma.light':
averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
plotXYCurve
The following object is masked from 'package:affxparser':
writeCdf
>
> ## Empty CDF
> cdf <- AffymetrixCdfFile()
> print(cdf)
AffymetrixCdfFile:
Path: NA
Filename: NA
File size: NA
Chip type: NA
File format: NA
Dimension: NAxNA
Number of cells: NA
>
> ## Missing CDF
> cdf <- AffymetrixCdfFile(NA_character_, mustExist=FALSE)
> print(cdf)
AffymetrixCdfFile:
Path: NA
Filename: NA
File size: NA
Chip type: NA
File format: NA
Dimension: NAxNA
Number of cells: NA
>
>
> if (setupExampleData(aroma.affymetrix, dataset="FusionSDK_Test3", dirs="annotationData", mustWork=FALSE)) {
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ # CDF file
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ cdf <- AffymetrixCdfFile$byChipType("Test3")
+ print(cdf)
+
+ # Unit names, types, ...
+ names <- getUnitNames(cdf)
+ str(names)
+
+ units <- indexOf(cdf, names=names[42:40])
+ stopifnot(all.equal(units, 42:40))
+
+ types <- getUnitTypes(cdf)
+ print(table(types))
+
+ data <- readUnits(cdf, units=1:10)
+ str(data)
+
+ data <- readDataFrame(cdf, units=1:10)
+ str(data)
+
+ md5 <- getChecksumFile(cdf)
+ print(md5)
+
+ ## Get an existing or create a new onocell CDF
+ cdfM <- getMonocellCdf(cdf, verbose=-10)
+ print(cdfM)
+ t0 <- lastModified(getPathname(cdfM))
+ print(t0)
+
+ ## A monocell CDF can be re-created
+ cdfM <- getMonocellCdf(cdf, force=TRUE)
+ print(cdfM)
+ t1 <- lastModified(getPathname(cdfM))
+ print(t1)
+ stopifnot(t1 >= t0)
+ } # if (... "AffymetrixDataTestFiles")
Ihre Berechtigungen reichen nicht aus, um diesen Vorgang auszuführen.
Der Befehl "cscript" ist entweder falsch geschrieben oder
konnte nicht gefunden werden.
[2026-06-06 10:16:30.583616] Exception: Failed to create file link (methods attempted: 'unix-symlink', 'windows-ntfs-symlink', 'windows-shortcut'; current working directory: 'd:/Rcompile/CRANpkg/local/4.6/aroma.affymetrix.Rcheck/tests'): 'annotationData/chipTypes/Test3/Test3.CDF'[.lnk] -> 'D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/annotationData/chipTypes/Test3/1.XDA/Test3.CDF'
Warnings and errors captured: unix-symlink produced simpleWarning: 'cannot symlink 'D:\RCompile\CRANpkg\lib\4.6\AffymetrixDataTestFiles\annotationData\chipTypes\Test3\1.XDA\Test3.CDF' to 'annotationData/chipTypes/Test3/Test3.CDF', reason 'Dem Client fehlt ein erforderliches Recht''; windows-ntfs-symlink produced Exception: 'Shell command 'mklink "annotationData/chipTypes/Test3/Test3.CDF" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/annotationData/chipTypes/Test3/1.XDA/Test3.CDF"' had status 1 (using shell 'C:\Windows\system32\cmd.exe'): '; windows-shortcut produced Exception: 'An error occurred when calling VBScript ('cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpsN7bsR\filedb528468569f5.vbs"') to create Windows Shortcut link 'annotationData/chipTypes/Test3/Test3.CDF.LNK'. The reason was: Shell command 'cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpsN7bsR\filedb528468569f5.vbs"' had status 1 (using shell 'C:\Windows\system32\cmd.exe'): '
at #04. createLink.default(link = pathnameD, target = pathnameS)
- createLink.default() is in environment 'R.utils'
at #03. createLink(link = pathnameD, target = pathnameS)
- createLink() is in environment 'R.utils'
at #02. setupExampleData.AromaAffymetrix(aroma.affymetrix, dataset = "FusionSDK_Test3",
dirs = "annotationData", mustWork = FALSE)
- setupExampleData.AromaAffymetrix() is in environment 'aroma.affymetrix'
at #01. setupExampleData(aroma.affymetrix, dataset = "FusionSDK_Test3",
dirs = "annotationData", mustWork = FALSE)
- setupExampleData() is in environment 'aroma.affymetrix'
Error: Failed to create file link (methods attempted: 'unix-symlink', 'windows-ntfs-symlink', 'windows-shortcut'; current working directory: 'd:/Rcompile/CRANpkg/local/4.6/aroma.affymetrix.Rcheck/tests'): 'annotationData/chipTypes/Test3/Test3.CDF'[.lnk] -> 'D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/annotationData/chipTypes/Test3/1.XDA/Test3.CDF'
Warnings and errors captured: unix-symlink produced simpleWarning: 'cannot symlink 'D:\RCompile\CRANpkg\lib\4.6\AffymetrixDataTestFiles\annotationData\chipTypes\Test3\1.XDA\Test3.CDF' to 'annotationData/chipTypes/Test3/Test3.CDF', reason 'Dem Client fehlt ein erforderliches Recht''; windows-ntfs-symlink produced Exception: 'Shell command 'mklink "annotationData/chipTypes/Test3/Test3.CDF" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/annotationData/chipTypes/Test3/1.XDA/Test3.CDF"' had status 1 (using shell 'C:\Windows\system32\cmd.exe'): '; windows-shortcut produced Exception: 'An error occurred when calling VBScript ('cscript
In addition: Warning messages:
1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
running command 'C:\Windows\system32\cmd.exe /c mklink "annotationData/chipTypes/Test3/Test3.CDF" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/annotationData/chipTypes/Test3/1.XDA/Test3.CDF"' had status 1
2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
running command 'C:\Windows\system32\cmd.exe /c cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpsN7bsR\filedb528468569f5.vbs"' had status 1
Execution halted
Running the tests in 'tests/AffymetrixCelSet.R' failed.
Complete output:
> library("aroma.affymetrix")
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.8.2 (2022-06-13 22:00:14 UTC) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.27.1 (2025-05-02 21:00:05 UTC) successfully loaded. See ?R.oo for help.
Attaching package: 'R.oo'
The following object is masked from 'package:R.methodsS3':
throw
The following objects are masked from 'package:methods':
getClasses, getMethods
The following objects are masked from 'package:base':
attach, detach, load, save
R.utils v2.13.0 (2025-02-24 21:20:02 UTC) successfully loaded. See ?R.utils for help.
Attaching package: 'R.utils'
The following object is masked from 'package:utils':
timestamp
The following objects are masked from 'package:base':
cat, commandArgs, getOption, isOpen, nullfile, parse, use, warnings
Loading required package: aroma.core
Loading required package: R.filesets
R.filesets v2.15.1 (2024-01-24 17:22:49 UTC) successfully loaded. See ?R.filesets for help.
Attaching package: 'R.filesets'
The following object is masked from 'package:R.utils':
validate
The following objects are masked from 'package:base':
append, readLines
Loading required package: R.devices
R.devices v2.17.4 (2026-05-09 14:42:11 UTC) successfully loaded. See ?R.devices for help.
aroma.core v3.3.2 (2025-08-18 23:10:02 UTC) successfully loaded. See ?aroma.core for help.
Attaching package: 'aroma.core'
The following objects are masked from 'package:base':
.Machine, colMeans, colSums, library, require, write
Loading required package: aroma.light
aroma.light v3.41.0 (2025-10-29 13:58:18 UTC) successfully loaded. See ?aroma.light for help.
Attaching package: 'aroma.light'
The following objects are masked from 'package:aroma.affymetrix':
averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
plotXYCurve
The following objects are masked from 'package:aroma.core':
callNaiveGenotypes, normalizeTumorBoost
Loading required package: affxparser
Attaching package: 'affxparser'
The following object is masked from 'package:aroma.affymetrix':
writeCdf
The following object is masked from 'package:R.utils':
findFiles
The following object is masked _by_ package:aroma.affymetrix:
writeCdf
The following object is masked from package:R.utils:
findFiles
aroma.affymetrix v3.2.3 (2025-08-19 07:00:02 UTC) successfully loaded. See ?aroma.affymetrix for help.
Attaching package: 'aroma.affymetrix'
The following objects are masked _by_ 'package:aroma.light':
averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
plotXYCurve
The following object is masked from 'package:affxparser':
writeCdf
>
> ## Empty CEL set
> ds <- AffymetrixCelSet()
> print(ds)
AffymetrixCelSet:
Name: NA
Tags:
Path: NA
Platform: Affymetrix
Chip type: NA
Number of arrays: 0
Time period: NA
Total file size: 0 B
>
> ## Extract non-existing subset on empty set
> ds <- AffymetrixCelSet()
> dsT <- extract(ds, "foo", onMissing="NA")
> print(dsT)
AffymetrixCelSet:
Name: NA
Tags:
Path: NA
Platform: Affymetrix
Chip type: NA
Number of arrays: 1
Names: NA [1]
Time period: NA -- NA
Total file size: 0 B
>
> ## CEL set with non-existing CEL file
> files <- list(AffymetrixCelFile())
> ds <- AffymetrixCelSet(files)
> print(ds)
AffymetrixCelSet:
Name: NA
Tags:
Path: NA
Platform: Affymetrix
Chip type: NA
Number of arrays: 1
Names: NA [1]
Time period: NA -- NA
Total file size: 0 B
>
>
> if (setupExampleData(aroma.affymetrix, mustWork=FALSE)) {
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ # CDF file
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ cdf <- AffymetrixCdfFile$byChipType("HG-Focus")
+ print(cdf)
+
+ # Unit names, types, ...
+ names <- getUnitNames(cdf)
+ str(names)
+
+ units <- indexOf(cdf, names=names[42:40])
+ stopifnot(all.equal(units, 42:40))
+
+ types <- getUnitTypes(cdf)
+ print(table(types))
+
+ data <- readUnits(cdf, units=1:10)
+ str(data)
+
+ data <- readDataFrame(cdf, units=1:10)
+ str(data)
+
+ md5 <- getChecksumFile(cdf)
+ print(md5)
+
+
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ # CEL set / CEL file
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ cels <- AffymetrixCelSet$byName("FusionSDK_HG-Focus", cdf=cdf)
+ print(cels)
+
+ # A single file
+ cel <- cels[[1]]
+ print(cel)
+
+ # File checksums
+ md5s <- getChecksumFileSet(cels)
+ print(md5s)
+
+ # File checksums
+ md5 <- getChecksumFile(cel)
+ print(md5)
+
+ # Average CEL file
+ celR <- getAverageFile(cels)
+ print(celR)
+
+
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ # AromaPlatformInterface
+ # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ platform <- getAromaPlatform(cdf)
+ print(platform)
+ stopifnot(equals(getAromaPlatform(cels), platform))
+ stopifnot(equals(getAromaPlatform(cel), platform))
+
+ # Unit names file
+ unf <- getUnitNamesFile(cdf)
+ print(unf)
+ stopifnot(equals(getUnitNamesFile(cels), unf))
+ stopifnot(equals(getUnitNamesFile(cel), unf))
+ } # if (require("AffymetrixDataTestFiles"))
Ihre Berechtigungen reichen nicht aus, um diesen Vorgang auszuführen.
Der Befehl "cscript" ist entweder falsch geschrieben oder
konnte nicht gefunden werden.
[2026-06-06 10:16:35.143194] Exception: Failed to create file link (methods attempted: 'unix-symlink', 'windows-ntfs-symlink', 'windows-shortcut'; current working directory: 'd:/Rcompile/CRANpkg/local/4.6/aroma.affymetrix.Rcheck/tests'): 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL'[.lnk] -> 'D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL'
Warnings and errors captured: unix-symlink produced simpleWarning: 'cannot symlink 'D:\RCompile\CRANpkg\lib\4.6\AffymetrixDataTestFiles\rawData\FusionSDK_HG-Focus\HG-Focus\2.Calvin\HG-Focus-1-121502.CEL' to 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL', reason 'Dem Client fehlt ein erforderliches Recht''; windows-ntfs-symlink produced Exception: 'Shell command 'mklink "rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL"' had status 1 (using shell 'C:\Windows\system32\cmd.exe'): '; windows-shortcut produced Exception: 'An error occurred when calling VBScript ('cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpumOroo\file858b4394f4acc.vbs"') to create Windows Shortcut link 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL.LNK'. The reason was: Shell command 'cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpumOroo\file858b4394f4acc.vbs"' had status 1 (using shell 'C:\Windows\system32\cmd.exe'): '
at #04. createLink.default(link = pathnameD, target = pathnameS, skip = TRUE)
- createLink.default() is in environment 'R.utils'
at #03. createLink(link = pathnameD, target = pathnameS, skip = TRUE)
- createLink() is in environment 'R.utils'
at #02. setupExampleData.AromaAffymetrix(aroma.affymetrix, mustWork = FALSE)
- setupExampleData.AromaAffymetrix() is in environment 'aroma.affymetrix'
at #01. setupExampleData(aroma.affymetrix, mustWork = FALSE)
- setupExampleData() is in environment 'aroma.affymetrix'
Error: Failed to create file link (methods attempted: 'unix-symlink', 'windows-ntfs-symlink', 'windows-shortcut'; current working directory: 'd:/Rcompile/CRANpkg/local/4.6/aroma.affymetrix.Rcheck/tests'): 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL'[.lnk] -> 'D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL'
Warnings and errors captured: unix-symlink produced simpleWarning: 'cannot symlink 'D:\RCompile\CRANpkg\lib\4.6\AffymetrixDataTestFiles\rawData\FusionSDK_HG-Focus\HG-Focus\2.Calvin\HG-Focus-1-121502.CEL' to 'rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL', reason 'Dem Client fehlt ein erforderliches Recht''; windows-ntfs-symlink produced Exception: 'Shell command 'mklink "rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL"' had status 1 (using shell 'C:\Windows\
In addition: Warning messages:
1: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
running command 'C:\Windows\system32\cmd.exe /c mklink "rawData/FusionSDK_HG-Focus/HG-Focus/HG-Focus-1-121502.CEL" "D:/RCompile/CRANpkg/lib/4.6/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL"' had status 1
2: In system(cmd, intern = intern, wait = wait | intern, show.output.on.console = wait, :
running command 'C:\Windows\system32\cmd.exe /c cscript "D:\temp\2026_06_06_01_50_00_18785\RtmpumOroo\file858b4394f4acc.vbs"' had status 1
Execution halted
Flavor: r-release-windows-x86_64