CRAN Package Check Results for Maintainer ‘Dionne Argyropoulos <argyropoulos.d at wehi.edu.au>’

Last updated on 2026-04-29 21:49:07 CEST.

Package	ERROR	OK
SeroTrackR	1	12

Package SeroTrackR

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘FAQs.Rmd’ using rmarkdown --- finished re-building ‘FAQs.Rmd’ --- re-building ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ using rmarkdown Quitting from Pk_Pv_Pf_Serology_Tutorial.Rmd:63-72 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `dyn.load()`: ! unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so': dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib --- Backtrace: ▆ 1. ├─SeroTrackR::runPlasmoPipeline(...) 2. │ └─SeroTrackR::classifyResults(...) 3. │ ├─dplyr::mutate(...) 4. │ ├─stats::predict(model, new_data = rau_data, type = "prob") 5. │ └─workflows:::predict.workflow(model, new_data = rau_data, type = "prob") 6. │ └─workflows:::forge_predictors(new_data, workflow) 7. │ ├─hardhat::forge(new_data, blueprint = mold$blueprint) 8. │ └─hardhat:::forge.data.frame(new_data, blueprint = mold$blueprint) 9. │ ├─hardhat::run_forge(blueprint, new_data = new_data, outcomes = outcomes) 10. │ └─hardhat:::run_forge.default_recipe_blueprint(...) 11. │ └─hardhat:::forge_recipe_default_process(...) 12. └─base::loadNamespace(x) 13. ├─base::namespaceImportFrom(...) 14. │ └─base::asNamespace(ns) 15. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 16. ├─base::namespaceImportFrom(...) 17. │ └─base::asNamespace(ns) 18. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 19. ├─base::namespaceImport(...) 20. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) 21. └─base::library.dynam(lib, package, package.lib) 22. └─base::dyn.load(file, DLLpath = DLLpath, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Pk_Pv_Pf_Serology_Tutorial.Rmd' failed with diagnostics: unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so': dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib --- failed re-building ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ --- re-building ‘PvLDH_Tutorial.Rmd’ using rmarkdown --- finished re-building ‘PvLDH_Tutorial.Rmd’ --- re-building ‘PvSeroApp_R_Tutorial.Rmd’ using rmarkdown Quitting from PvSeroApp_R_Tutorial.Rmd:75-86 [runPvSeroPipeline with classification] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `dyn.load()`: ! unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so': dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib --- Backtrace: ▆ 1. ├─SeroTrackR::runPvSeroPipeline(...) 2. │ └─SeroTrackR::classifyResults(...) 3. │ ├─dplyr::mutate(...) 4. │ ├─stats::predict(model, new_data = rau_data, type = "prob") 5. │ └─workflows:::predict.workflow(model, new_data = rau_data, type = "prob") 6. │ └─workflows:::forge_predictors(new_data, workflow) 7. │ ├─hardhat::forge(new_data, blueprint = mold$blueprint) 8. │ └─hardhat:::forge.data.frame(new_data, blueprint = mold$blueprint) 9. │ ├─hardhat::run_forge(blueprint, new_data = new_data, outcomes = outcomes) 10. │ └─hardhat:::run_forge.default_recipe_blueprint(...) 11. │ └─hardhat:::forge_recipe_default_process(...) 12. └─base::loadNamespace(x) 13. ├─base::namespaceImportFrom(...) 14. │ └─base::asNamespace(ns) 15. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 16. ├─base::namespaceImportFrom(...) 17. │ └─base::asNamespace(ns) 18. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 19. ├─base::namespaceImport(...) 20. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) 21. └─base::library.dynam(lib, package, package.lib) 22. └─base::dyn.load(file, DLLpath = DLLpath, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PvSeroApp_R_Tutorial.Rmd' failed with diagnostics: unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so': dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib --- failed re-building ‘PvSeroApp_R_Tutorial.Rmd’ --- re-building ‘setup.Rmd’ using rmarkdown [WARNING] Could not fetch resource ../man/figures/magpix_raw.jpeg [WARNING] Could not fetch resource ../man/figures/bioplex_raw.jpeg [WARNING] Could not fetch resource ../man/figures/plate_layout_1.jpeg --- finished re-building ‘setup.Rmd’ SUMMARY: processing the following files failed: ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ ‘PvSeroApp_R_Tutorial.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64