Last updated on 2026-10-15 21:53:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.10.3 | 3.79 | 49.41 | 53.20 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.10.3 | 3.25 | 39.01 | 42.26 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.10.3 | 36.36 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.10.3 | 43.23 | NOTE | |||
| r-devel-windows-x86_64 | 1.10.3 | 6.00 | 88.00 | 94.00 | NOTE | |
| r-patched-linux-x86_64 | 1.10.3 | 4.22 | 39.39 | 43.61 | ERROR | |
| r-release-linux-x86_64 | 1.10.3 | 3.16 | 44.83 | 47.99 | OK | |
| r-release-macos-arm64 | 1.10.3 | 1.00 | 22.00 | 23.00 | ERROR | |
| r-release-macos-x86_64 | 1.10.3 | 3.00 | 76.00 | 79.00 | OK | |
| r-release-windows-x86_64 | 1.10.3 | 6.00 | 62.00 | 68.00 | OK | |
| r-oldrel-macos-arm64 | 1.10.3 | 1.00 | 30.00 | 31.00 | OK | |
| r-oldrel-macos-x86_64 | 1.10.3 | 3.00 | 145.00 | 148.00 | OK | |
| r-oldrel-windows-x86_64 | 1.10.3 | 8.00 | 91.00 | 99.00 | OK |
Version: 1.10.3
Check: dependencies in R code
Result: NOTE
Base package in Suggests/Enhances imported in NAMESPACE:
‘stats’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.10.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘get_started_with_TCGAretriever.Rmd’ using rmarkdown
Quitting from get_started_with_TCGAretriever.Rmd:120-135 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `auto_copy()`:
! `x` and `y` must share the same src.
ℹ `x` is a <data.frame> object.
ℹ `y` is `NULL`.
ℹ Set `copy = TRUE` if `y` can be copied to the same source as `x` (may be
slow).
---
Backtrace:
▆
1. └─TCGAretriever::get_clinical_data(csid = q_csid, case_list_id = q_cases)
2. ├─dplyr::left_join(...)
3. └─dplyr:::left_join.data.frame(...)
4. └─dplyr::auto_copy(x, y, copy = copy)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'get_started_with_TCGAretriever.Rmd' failed with diagnostics:
`x` and `y` must share the same src.
ℹ `x` is a <data.frame> object.
ℹ `y` is `NULL`.
ℹ Set `copy = TRUE` if `y` can be copied to the same source as `x` (may be
slow).
--- failed re-building ‘get_started_with_TCGAretriever.Rmd’
SUMMARY: processing the following file failed:
‘get_started_with_TCGAretriever.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.10.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘get_started_with_TCGAretriever.Rmd’ using rmarkdown
Error in .Call(R_curl_fetch_memory, enc2utf8(url), handle, nonblocking) :
reached elapsed time limit
Quitting from get_started_with_TCGAretriever.Rmd:47-55 [unnamed-chunk-1]
Execution halted
Flavor: r-release-macos-arm64