Last updated on 2026-04-08 21:52:03 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 25.62 | 64.61 | 90.23 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 19.59 | 44.07 | 63.66 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 44.00 | 103.12 | 147.12 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 54.00 | 105.78 | 159.78 | OK | |
| r-devel-macos-arm64 | 1.0.0 | 6.00 | 23.00 | 29.00 | OK | |
| r-devel-windows-x86_64 | 1.0.0 | 35.00 | 106.00 | 141.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 27.94 | 60.38 | 88.32 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 21.82 | 57.91 | 79.73 | OK | |
| r-release-macos-arm64 | 1.0.0 | 5.00 | 29.00 | 34.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 18.00 | 93.00 | 111.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 30.00 | 99.00 | 129.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 5.00 | 33.00 | 38.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.0 | 18.00 | 95.00 | 113.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 38.00 | 126.00 | 164.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVG)
SVG: Spatially Variable Genes Detection Methods
Version: 1.0.0
Author: Zaoqu Liu (liuzaoqu@163.com)
GitHub: https://github.com/Zaoqu-Liu/SVG
---
Available methods: MERINGUE, binSpect, SPARK-X, nnSVG
Use CalSVG() for unified interface or CalSVG_*() for specific methods
Optional packages not installed:
- geometry (for Delaunay triangulation)
Install with: install.packages(c('geometry', 'RANN', 'BRISC'))
>
> test_check("SVG")
Saving _problems/test-CalSVG-methods-160.R
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 83 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• {geometry} is not installed (1): 'test-spatial-network.R:37:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CalSVG-methods.R:160:5'): p-values are in valid range ──────────
Error in `getSpatialNeighbors_Delaunay(coords, filter_dist = filter_dist, binary = binary, verbose = verbose)`: Package 'geometry' is required for Delaunay triangulation. Please install it with: install.packages('geometry')
Backtrace:
▆
1. └─SVG::CalSVG_MERINGUE(expr, coords, verbose = FALSE) at test-CalSVG-methods.R:160:5
2. └─SVG::buildSpatialNetwork(...)
3. └─SVG::getSpatialNeighbors_Delaunay(...)
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 83 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘SVG-introduction.Rmd’ using rmarkdown
Quitting from SVG-introduction.Rmd:547-562 [binspect-run]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getSpatialNeighbors_Delaunay()`:
! Package 'geometry' is required for Delaunay triangulation. Please install it with: install.packages('geometry')
---
Backtrace:
▆
1. └─SVG::CalSVG_binSpect(...)
2. └─SVG::buildSpatialNetwork(...)
3. └─SVG::getSpatialNeighbors_Delaunay(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SVG-introduction.Rmd' failed with diagnostics:
Package 'geometry' is required for Delaunay triangulation. Please install it with: install.packages('geometry')
--- failed re-building ‘SVG-introduction.Rmd’
SUMMARY: processing the following file failed:
‘SVG-introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc