CRAN Package Check Results for Package ProjectTemplate

Last updated on 2025-08-22 21:48:35 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.11.0 5.40 88.08 93.48 ERROR
r-devel-linux-x86_64-debian-gcc 0.11.0 4.00 60.12 64.12 ERROR
r-devel-linux-x86_64-fedora-clang 0.11.0 154.19 ERROR
r-devel-linux-x86_64-fedora-gcc 0.11.0 150.67 ERROR
r-devel-windows-x86_64 0.11.0 8.00 177.00 185.00 ERROR
r-patched-linux-x86_64 0.11.0 6.44 80.89 87.33 ERROR
r-release-linux-x86_64 0.11.0 4.88 80.32 85.20 ERROR
r-release-macos-arm64 0.11.0 79.00 OK
r-release-macos-x86_64 0.11.0 139.00 OK
r-release-windows-x86_64 0.11.0 9.00 179.00 188.00 ERROR
r-oldrel-macos-arm64 0.11.0 79.00 OK
r-oldrel-macos-x86_64 0.11.0 168.00 OK
r-oldrel-windows-x86_64 0.11.0 9.00 207.00 216.00 ERROR

Check Details

Version: 0.11.0
Check: tests
Result: ERROR Running ‘run-all.R’ [20s/44s] Running ‘testthat.R’ [20s/48s] Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project38359f318ac727 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project38359f6c6bcbb5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project38359f53c1019c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project38359f53c1019c version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project38359f53c1019c version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project38359f5d55b7c3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project38359f14109829 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project38359f14109829 Clearing cache for project: test_project38359f12049006 Objects to clear from memory: xxx Project name: test_project38359f12049006 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project38359f7400796f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f7400796f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project38359f63d90591 Project name: test_project38359f4350ab97 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f54a076e4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project38359f7de3938c is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project38359f7de3938c is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project238359f3d270df0 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file38359f39977bb4 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project38359f6a4b743e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project38359f6a4b743e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project38359f6a4b743e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project38359f6a4b743e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project38359f6a4b743e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project38359f6a4b743e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project38359f6a4b743e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project38359f16ddee77 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project38359f3644b47f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project38359f3de54c03 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f3de54c03 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project38359f693039cc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f693039cc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project38359f38f24a97 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f38f24a97 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project38359f2dd403e6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project38359f7c9d19e7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f7c9d19e7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project38359f748556b2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f748556b2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project38359f3f838cd0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f3f838cd0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project38359f4f51dc6b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f4f51dc6b Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project38359f71d547d2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f71d547d2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project38359f63fe0ed1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project38359f5f16aabe Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f47a02c29 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project38359f12a42d5a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project3874f75254796f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3874f7436984c5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3874f77ed9bc4f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project3874f77ed9bc4f version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project3874f77ed9bc4f version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project3874f77e6e2f90 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project3874f74cc12332 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project3874f74cc12332 Clearing cache for project: test_project3874f774816b61 Objects to clear from memory: xxx Project name: test_project3874f774816b61 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project3874f776932411 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f776932411 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project3874f76155629d Project name: test_project3874f742848584 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f71863e0a6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project3874f710dc683d is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project3874f710dc683d is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project23874f7cf109d0 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file3874f73cddd617 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project3874f713d0a2a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project3874f713d0a2a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project3874f713d0a2a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project3874f713d0a2a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project3874f713d0a2a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project3874f713d0a2a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project3874f713d0a2a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project3874f72f39fba Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project3874f7237b2da7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project3874f72d8b96f5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f72d8b96f5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3874f77535e7f3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f77535e7f3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3874f7701aefe4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f7701aefe4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3874f75359bba5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3874f769c0c927 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f769c0c927 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project3874f76e5b45e2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f76e5b45e2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3874f719bd9b2a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f719bd9b2a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project3874f714a03df2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f714a03df2 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project3874f7b0f9699 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f7b0f9699 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project3874f760111982 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project3874f76ac739ae Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f71361cf43 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3874f74cca8672 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.11.0
Check: tests
Result: ERROR Running ‘run-all.R’ [13s/32s] Running ‘testthat.R’ [13s/32s] Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project11802c73821adf Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project11802c70c58cec Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project11802c72f1412e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project11802c72f1412e version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project11802c72f1412e version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project11802c19233387 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project11802c60650a0d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project11802c60650a0d Clearing cache for project: test_project11802c1c2f5114 Objects to clear from memory: xxx Project name: test_project11802c1c2f5114 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project11802c624f71d1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c624f71d1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project11802c39a49953 Project name: test_project11802c5dd3a458 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c26a328d3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project11802c25f98fe2 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project11802c25f98fe2 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project211802c7204f6db is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file11802c4938f1fc helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project11802c773dde47 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project11802c773dde47 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project11802c773dde47 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project11802c773dde47 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project11802c773dde47 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project11802c773dde47 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project11802c773dde47 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project11802cb20376e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project11802c442b37c0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project11802c7564cc59 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c7564cc59 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project11802c2cbb860d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c2cbb860d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project11802c3b86bf7f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c3b86bf7f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project11802c441b1da1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project11802c4111ce32 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c4111ce32 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project11802c22e23da5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c22e23da5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project11802c75f4952c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c75f4952c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project11802c1056fe33 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c1056fe33 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project11802c25642cee Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c25642cee Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project11802c1bb92bb2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project11802c79c96865 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c4630b13e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project11802c3088bae0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project120d596ce0c376 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project120d594aef5159 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project120d594fe70f68 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project120d594fe70f68 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project120d594fe70f68 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project120d596e007c4e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project120d5919f34e7f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project120d5919f34e7f Clearing cache for project: test_project120d59c676cc7 Objects to clear from memory: xxx Project name: test_project120d59c676cc7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project120d595ad91387 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d595ad91387 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project120d59425fb2be Project name: test_project120d59336cffe9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d59204c1128 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project120d5958fd3cb6 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project120d5958fd3cb6 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project2120d5962ba331c is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file120d591e24374f helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project120d5930e52765 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project120d5930e52765 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project120d5930e52765 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project120d5930e52765 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project120d5930e52765 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project120d5930e52765 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project120d5930e52765 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project120d59287f83e5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project120d597b491497 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project120d591ea09495 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d591ea09495 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project120d594c3a3f05 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d594c3a3f05 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project120d5946ed594a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d5946ed594a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project120d593652adb0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project120d5927bb96a3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d5927bb96a3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project120d596dd1a4a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d596dd1a4a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project120d599f3ac2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d599f3ac2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project120d591bfb2b6e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d591bfb2b6e Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project120d596d399ced Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d596d399ced Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project120d5954d66a47 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project120d5956cbb2e8 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d593eaf21bb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project120d592603faf5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.11.0
Check: tests
Result: ERROR Running ‘run-all.R’ [35s/95s] Running ‘testthat.R’ [35s/93s] Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project20f939510623d4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project20f9396ac169a3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project20f9397ca124b6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project20f9397ca124b6 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project20f9397ca124b6 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project20f939219a74d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project20f9391f2ebed5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project20f9391f2ebed5 Clearing cache for project: test_project20f9393a4755fa Objects to clear from memory: xxx Project name: test_project20f9393a4755fa Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project20f939430194 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f939430194 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project20f9393114ecb3 Project name: test_project20f9394b2a0ff1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f939115e2d59 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project20f9396ec9ca56 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project20f9396ec9ca56 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project220f939600cf9f7 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file20f9394b6aecec helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project20f93936bb79b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project20f93936bb79b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project20f93936bb79b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project20f93936bb79b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project20f93936bb79b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project20f93936bb79b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project20f93936bb79b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project20f9392c6b78a5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project20f939318acd5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project20f93963c73e71 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f93963c73e71 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project20f9392f5e3a0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f9392f5e3a0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project20f939156a4165 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f939156a4165 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project20f93925cf041c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project20f9396f4e527f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f9396f4e527f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project20f93951edbcde Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f93951edbcde Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project20f9396a9052bc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f9396a9052bc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project20f9395e8fc205 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f9395e8fc205 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project20f939280b8e5b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f939280b8e5b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project20f9399c6796f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project20f9392adf53ca Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f939d6f3233 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project20f9391813d234 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project2144c819ba930a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2144c87e9760ec Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2144c86cd8a070 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2144c86cd8a070 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project2144c86cd8a070 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project2144c865cac151 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project2144c82f0cba7a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project2144c82f0cba7a Clearing cache for project: test_project2144c84a95847c Objects to clear from memory: xxx Project name: test_project2144c84a95847c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project2144c875677eec Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c875677eec Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2144c87d1fd092 Project name: test_project2144c830e00318 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c84d319632 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project2144c813ad6db6 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project2144c813ad6db6 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project22144c8a42599b is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file2144c812a03e75 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project2144c86984720e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project2144c86984720e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project2144c86984720e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project2144c86984720e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project2144c86984720e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project2144c86984720e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project2144c86984720e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project2144c8659cb8f9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project2144c87b38a209 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project2144c86148a227 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c86148a227 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2144c8251e8ad4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c8251e8ad4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2144c870d404e2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c870d404e2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2144c81ba9253 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2144c8431fca66 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c8431fca66 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2144c855ad06a0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c855ad06a0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2144c81c866b61 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c81c866b61 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2144c832eff084 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c832eff084 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project2144c813bc460c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c813bc460c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project2144c841c9ba24 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project2144c831e320cc Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c8333ef066 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2144c83278c6fc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.11.0
Check: tests
Result: ERROR Running ‘run-all.R’ [33s/202s] Running ‘testthat.R’ [34s/198s] Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project3747736abf49b9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3747733811691a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project37477363c5fa8e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project37477363c5fa8e version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project37477363c5fa8e version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project37477348b1f007 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project374773b0785a4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project374773b0785a4 Clearing cache for project: test_project3747734f3e87b0 Objects to clear from memory: xxx Project name: test_project3747734f3e87b0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project37477379bc4cf4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project37477379bc4cf4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project37477364e0fe0b Project name: test_project374773765ce45c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3747738964c74 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project3747731d0772c5 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project3747731d0772c5 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project23747737a1968c is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file374773733ae87e helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project374773578af68f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project374773578af68f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project374773578af68f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project374773578af68f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project374773578af68f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project374773578af68f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project374773578af68f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project3747734a32d0f3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project374773599b2629 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project3747734068cf36 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3747734068cf36 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project374773e600e87 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project374773e600e87 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3747737a8d06d3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3747737a8d06d3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3747737bf61a77 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project37477321035abb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project37477321035abb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project37477335f1aff7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project37477335f1aff7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project37477334debc10 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project37477334debc10 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project374773e9a7571 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project374773e9a7571 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project3747732330ce68 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3747732330ce68 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project37477376c0ac69 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project37477357cda801 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project374773602ddb3e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3747736663e510 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project379c5e56673f1c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project379c5e3213cc2f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project379c5e31dec490 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project379c5e31dec490 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project379c5e31dec490 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project379c5e44e2db0a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project379c5e7b15cbb5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project379c5e7b15cbb5 Clearing cache for project: test_project379c5e3f300c8e Objects to clear from memory: xxx Project name: test_project379c5e3f300c8e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project379c5e5dd6a6e7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e5dd6a6e7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project379c5e1515913e Project name: test_project379c5e35396e5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e42e70867 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project379c5e7259a9b3 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project379c5e7259a9b3 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project2379c5e3f03fda6 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file379c5e7d33ed08 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project379c5e7e9b0b49 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project379c5e7e9b0b49 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project379c5e7e9b0b49 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project379c5e7e9b0b49 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project379c5e7e9b0b49 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project379c5e7e9b0b49 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project379c5e7e9b0b49 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project379c5e6c0b3639 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project379c5e1a8a74be Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project379c5e25a7ec43 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e25a7ec43 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project379c5e60ccaff0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e60ccaff0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project379c5e7a450392 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e7a450392 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project379c5e2265b6e7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project379c5e6f1e683f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e6f1e683f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project379c5e2de48786 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e2de48786 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project379c5e272bddf9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e272bddf9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project379c5e4b7e157c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e4b7e157c Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project379c5e7e7f5f53 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e7e7f5f53 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project379c5e2959dad8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project379c5e27486f0c Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5ee883d4a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project379c5e6c6dd338 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.11.0
Check: tests
Result: ERROR Running 'run-all.R' [54s] Running 'testthat.R' [53s] Running the tests in 'tests/run-all.R' failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project28f3036c7a51 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28f3019be358e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28f306ff703b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project28f306ff703b version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project28f306ff703b version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project28f3022253f72 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project28f30e3c388a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project28f30e3c388a Clearing cache for project: test_project28f30215a13b3 Objects to clear from memory: xxx Project name: test_project28f30215a13b3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project28f3016b542b4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f3016b542b4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project28f3055e54616 Project name: test_project28f303b685745 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f3025b26c80 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_project28f30781723d4 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project28f30781723d4 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project228f3019d5fc5 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file28f3057a8305 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project28f3039231ef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project28f3039231ef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project28f3039231ef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project28f3039231ef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project28f3039231ef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project28f3039231ef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project28f3039231ef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project28f301c5a5288 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project28f3078f65b4e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project28f304279796c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f304279796c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28f30489d7abb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f30489d7abb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28f301ebf1a7b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f301ebf1a7b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28f301a2e4174 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28f304ea211a9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f304ea211a9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project28f3059996755 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f3059996755 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28f3073d0b8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f3073d0b8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project28f309c72b48 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f309c72b48 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project28f303ed73f12 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f303ed73f12 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project28f307eb51c74 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project28f30d8d5f27 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f3017864671 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28f30a043b9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project1944cf0c64ff Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1944c33233a1c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1944c42d2057 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project1944c42d2057 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project1944c42d2057 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project1944c9fd5b08 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project1944c4eeb3a6c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project1944c4eeb3a6c Clearing cache for project: test_project1944c482d24df Objects to clear from memory: xxx Project name: test_project1944c482d24df Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project1944c24554efe Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c24554efe Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project1944c11382f Project name: test_project1944c1b1610bf Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c79624a75 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_project1944ce277a65 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project1944ce277a65 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project21944c3c12704e is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file1944c3171655d helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project1944c12b93819 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project1944c12b93819 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project1944c12b93819 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project1944c12b93819 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project1944c12b93819 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project1944c12b93819 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project1944c12b93819 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project1944c5cb7289 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project1944c28df634d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project1944cdb87255 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944cdb87255 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1944c83124e6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c83124e6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1944c79e1667e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c79e1667e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1944ce132d5a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1944c366e5739 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c366e5739 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project1944c481eedc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c481eedc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1944c290242b6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c290242b6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project1944c76af7e27 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c76af7e27 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project1944c4d1a772e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c4d1a772e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project1944c56fb254f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project1944c64b42e4c Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944cc04603e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1944c80d83a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 0.11.0
Check: tests
Result: ERROR Running ‘run-all.R’ [20s/49s] Running ‘testthat.R’ [19s/41s] Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project22d5d9245849d9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project22d5d973052feb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project22d5d930bdadf Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project22d5d930bdadf version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project22d5d930bdadf version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project22d5d97d14223b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project22d5d929d7d6b7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project22d5d929d7d6b7 Clearing cache for project: test_project22d5d950ccdeb3 Objects to clear from memory: xxx Project name: test_project22d5d950ccdeb3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project22d5d939e5e70b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d939e5e70b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project22d5d944dcd28a Project name: test_project22d5d947055d15 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d963198148 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project22d5d92befb468 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project22d5d92befb468 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project222d5d932b17ef4 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file22d5d92edb6694 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project22d5d94a8c98b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project22d5d94a8c98b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project22d5d94a8c98b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project22d5d94a8c98b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project22d5d94a8c98b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project22d5d94a8c98b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project22d5d94a8c98b9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project22d5d9291b59da Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project22d5d916a3885f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project22d5d9feea78d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d9feea78d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project22d5d922b1b6a4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d922b1b6a4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project22d5d94fa68365 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d94fa68365 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project22d5d9738ffddf Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project22d5d945fad884 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d945fad884 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project22d5d96105fef0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d96105fef0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project22d5d9546b707a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d9546b707a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project22d5d91d37b608 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d91d37b608 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project22d5d94073c83c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d94073c83c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project22d5d96c96495b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project22d5d92558b2ce Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d91507ec99 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project22d5d966fc9cef Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project2326e6761bcc3a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2326e62d61c80b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2326e6719cc20 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2326e6719cc20 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project2326e6719cc20 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project2326e67542596e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project2326e61db4c27b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project2326e61db4c27b Clearing cache for project: test_project2326e66fb6a84f Objects to clear from memory: xxx Project name: test_project2326e66fb6a84f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project2326e65739d068 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e65739d068 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2326e6702da24 Project name: test_project2326e64136c1c6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e671a49f87 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project2326e622a05b24 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project2326e622a05b24 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project22326e6756bc1ef is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file2326e63845e08a helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project2326e6788deb89 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project2326e6788deb89 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project2326e6788deb89 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project2326e6788deb89 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project2326e6788deb89 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project2326e6788deb89 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project2326e6788deb89 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project2326e659f6796c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project2326e6226f1978 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project2326e612b52109 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e612b52109 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2326e617c2842 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e617c2842 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2326e65e02e78b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e65e02e78b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2326e668adbe53 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2326e61e668bb6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e61e668bb6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2326e6289c0008 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e6289c0008 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2326e63608e6cb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e63608e6cb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2326e65d8927d0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e65d8927d0 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project2326e621f2380d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e621f2380d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project2326e65f78c8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project2326e6691486b1 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e678574929 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2326e6700f1d8e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 0.11.0
Check: tests
Result: ERROR Running ‘run-all.R’ [20s/53s] Running ‘testthat.R’ [19s/42s] Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project39652975c5de53 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3965295dc60519 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39652967b159e0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project39652967b159e0 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project39652967b159e0 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project3965294fbcf821 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project3965292639f3ad Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project3965292639f3ad Clearing cache for project: test_project3965293ada814d Objects to clear from memory: xxx Project name: test_project3965293ada814d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project3965294a5611a0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3965294a5611a0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project3965291b8d0a65 Project name: test_project3965293f20fc3e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project396529a290dae Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project3965295810d6ab is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project3965295810d6ab is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project23965292367cfb0 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file3965297852758c helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project3965293d4c00f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project3965293d4c00f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project3965293d4c00f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project3965293d4c00f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project3965293d4c00f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project3965293d4c00f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project3965293d4c00f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project396529761913d8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project39652941be81ed Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project3965295a07110b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3965295a07110b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3965294918ff9e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3965294918ff9e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39652956d512be Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39652956d512be Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3965291ea94359 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3965297a7f99e9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3965297a7f99e9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project3965295ccfdb04 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3965295ccfdb04 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project3965292b9672f7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project3965292b9672f7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project39652963248576 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39652963248576 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project39652921899d7e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39652921899d7e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project3965297dae790d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project396529395baf18 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project396529719a6a06 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39652988dc9ed Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project39b9aa18634c42 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa4c8e527a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa1797807d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project39b9aa1797807d version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project39b9aa1797807d version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa16d4c04e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project39b9aa25cedb22 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project39b9aa25cedb22 Clearing cache for project: test_project39b9aa6fe21402 Objects to clear from memory: xxx Project name: test_project39b9aa6fe21402 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project39b9aa448b4da6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa448b4da6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project39b9aa5392bd1b Project name: test_project39b9aa5ea167fb Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa3be52c05 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project39b9aa76999574 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project39b9aa76999574 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project239b9aa197490d is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file39b9aa21c56f05 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project39b9aa3778e6fd is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project39b9aa3778e6fd is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project39b9aa3778e6fd is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project39b9aa3778e6fd is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project39b9aa3778e6fd is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project39b9aa3778e6fd is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project39b9aa3778e6fd is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project39b9aacafafce Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project39b9aa28cd42c9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project39b9aa4a2ce9ad Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa4a2ce9ad Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa39ab811f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa39ab811f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa5463c643 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa5463c643 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa2a6deb3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa275adf9f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa275adf9f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa6d2bf95f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa6d2bf95f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa51a92c15 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa51a92c15 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa6a309714 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa6a309714 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project39b9aa429edbbc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa429edbbc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project39b9aa733f62c8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project39b9aa10bff98f Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa18214469 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project39b9aa1c8d905b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 0.11.0
Check: tests
Result: ERROR Running 'run-all.R' [54s] Running 'testthat.R' [56s] Running the tests in 'tests/run-all.R' failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project1f83c541340ef Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1f83c3b226f02 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1f83c590be23 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project1f83c590be23 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project1f83c590be23 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project1f83c2b0f1e8f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project1f83c21634fa2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project1f83c21634fa2 Clearing cache for project: test_project1f83c47d77ee6 Objects to clear from memory: xxx Project name: test_project1f83c47d77ee6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project1f83c2501fcf Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c2501fcf Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project1f83c746370b4 Project name: test_project1f83cdebc58 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c4d9a4f30 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_project1f83c38c53109 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project1f83c38c53109 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project21f83c72b410bc is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file1f83c5ec19fd helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project1f83c586edef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project1f83c586edef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project1f83c586edef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project1f83c586edef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project1f83c586edef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project1f83c586edef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project1f83c586edef is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project1f83c4ef6637c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project1f83c1e436750 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project1f83c640076e2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c640076e2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1f83c30f8648c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c30f8648c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1f83c3d0968e1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c3d0968e1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1f83c317a2c1f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1f83c1174332d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c1174332d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project1f83c15741c91 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c15741c91 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1f83c33866292 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c33866292 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project1f83c39d451df Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c39d451df Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project1f83c7d135d31 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c7d135d31 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project1f83c33396d88 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project1f83c20277958 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c18fa862 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1f83c12772c2a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project1e2c833386fd Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1e2c8346753f0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1e2c861191d9f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project1e2c861191d9f version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project1e2c861191d9f version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project1e2c856c76e84 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project1e2c86f262e3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project1e2c86f262e3 Clearing cache for project: test_project1e2c8528a6473 Objects to clear from memory: xxx Project name: test_project1e2c8528a6473 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project1e2c85812378 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c85812378 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project1e2c8146f12d Project name: test_project1e2c87e781332 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c852b185 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_project1e2c854b575fb is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project1e2c854b575fb is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project21e2c83cd179a5 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file1e2c81a954bb5 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project1e2c878e56f79 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project1e2c878e56f79 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project1e2c878e56f79 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project1e2c878e56f79 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project1e2c878e56f79 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project1e2c878e56f79 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project1e2c878e56f79 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project1e2c8414668dc Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project1e2c8180c11ae Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project1e2c83a1f4f2b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c83a1f4f2b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1e2c86a6b2118 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c86a6b2118 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1e2c8390a5243 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c8390a5243 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1e2c8653f5866 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1e2c84a2061c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c84a2061c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project1e2c875d96e78 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c875d96e78 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1e2c879847f0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c879847f0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project1e2c8609d771e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c8609d771e Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project1e2c83636ad Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c83636ad Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project1e2c845ebc4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project1e2c8632d4dd Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c81857190 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1e2c82c4360a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 0.11.0
Check: tests
Result: ERROR Running 'run-all.R' [65s] Running 'testthat.R' [62s] Running the tests in 'tests/run-all.R' failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_projectb18437184139 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_projectb1844b13c0e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_projectb18470ee7479 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_projectb18470ee7479 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_projectb18470ee7479 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_projectb1845ac63803 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_projectb18413f04586 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_projectb18413f04586 Clearing cache for project: test_projectb1843a24aa6 Objects to clear from memory: xxx Project name: test_projectb1843a24aa6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_projectb1841c993d8c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1841c993d8c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_projectb1844a32c4d Project name: test_projectb1847133321d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1843f0f7d54 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_projectb1845b312042 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_projectb1845b312042 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project2b18427d5a9c is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config fileb18433d81c47 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_projectb18413a25d1c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_projectb18413a25d1c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_projectb18413a25d1c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_projectb18413a25d1c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_projectb18413a25d1c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_projectb18413a25d1c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_projectb18413a25d1c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_projectb1846ab972a0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_projectb18443293695 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_projectb1846b5541e5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1846b5541e5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_projectb184223945ea Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb184223945ea Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_projectb1846066754d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1846066754d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_projectb18461fc472b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_projectb184959378c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb184959378c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_projectb1842e8a4f9f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1842e8a4f9f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_projectb1841e005d93 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1841e005d93 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_projectb18464b14f1e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb18464b14f1e Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_projectb1844fa63bf8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1844fa63bf8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_projectb184cb976d1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_projectb18420a516f0 Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb1841ec144ae Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_projectb184e3e75b9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project75701fa73d2a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project757047f9306b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project757025d62cbf Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project757025d62cbf version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project757025d62cbf version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project7570321456ad Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project75703477bde Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project75703477bde Clearing cache for project: test_project75703b954a63 Objects to clear from memory: xxx Project name: test_project75703b954a63 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project7570501feb8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project7570501feb8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project757072ac37f8 Project name: test_project757043bf7f86 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project75706ab325fe Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_project75704a517e27 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project75704a517e27 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project27570473b3f56 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file75706e9d5f76 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project7570bd45425 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project7570bd45425 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project7570bd45425 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project7570bd45425 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project7570bd45425 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project7570bd45425 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project7570bd45425 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project757077561b15 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project7570eb54e95 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project7570380552d4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project7570380552d4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project75705b1e5e62 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project75705b1e5e62 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project7570567b759a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project7570567b759a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project7570e604133 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project7570630079a6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project7570630079a6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project75704f93cb8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project75704f93cb8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project75706cbf1b33 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project75706cbf1b33 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project757069162714 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project757069162714 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project75706f84170 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project75706f84170 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project757028832c40 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project75701e09451a Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project75707a40252f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project757017cf454 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64